Ancestry shared between two individuals
Inference of the Cumulative Coalescent Function (CCF) between target and comparator genomes
Shared ancestry inference based on genomic data from the 1000 Genomes Project, phase 3 TGP
⇪
CCFs were computed using information from the Atlas of Variant Age, with allele age estimated using data from TGP alone and under the joint clock model
Target individual
HG01197
Continental population: American
AMR
Population group: Puerto Ricans from Puerto Rico
PUR
Comparator individual
HG04202
Continental population: South Asian
SAS
Population group: Indian Telugu from the UK
ITU
-
-
HG01879
HG01880
HG01882
HG01883
HG01885
HG01886
HG01889
HG01890
HG01894
HG01896
HG01912
HG01914
HG01915
HG01956
HG01958
HG01985
HG01986
HG01988
HG01989
HG01990
HG02009
HG02010
HG02012
HG02013
HG02014
HG02051
HG02052
HG02053
HG02054
HG02095
HG02107
HG02108
HG02111
HG02143
HG02144
HG02255
HG02256
HG02281
HG02282
HG02283
HG02284
HG02307
HG02308
HG02309
HG02314
HG02315
HG02317
HG02318
HG02322
HG02323
HG02325
HG02330
HG02332
HG02334
HG02337
HG02339
HG02343
HG02419
HG02420
HG02427
HG02429
HG02433
HG02439
HG02442
HG02445
HG02449
HG02450
HG02455
HG02470
HG02471
HG02476
HG02477
HG02479
HG02481
HG02484
HG02485
HG02489
HG02496
HG02497
HG02501
HG02502
HG02505
HG02508
HG02511
HG02536
HG02537
HG02541
HG02545
HG02546
HG02549
HG02554
HG02555
HG02557
HG02558
HG02577
HG02580
-
NA19625
NA19700
NA19701
NA19703
NA19704
NA19707
NA19711
NA19712
NA19713
NA19818
NA19819
NA19834
NA19835
NA19900
NA19901
NA19904
NA19908
NA19909
NA19913
NA19914
NA19916
NA19917
NA19920
NA19921
NA19922
NA19923
NA19982
NA19984
NA19985
NA20126
NA20127
NA20274
NA20276
NA20278
NA20281
NA20282
NA20287
NA20289
NA20291
NA20294
NA20296
NA20298
NA20299
NA20314
NA20317
NA20318
NA20320
NA20321
NA20322
NA20332
NA20334
NA20336
NA20339
NA20340
NA20341
NA20342
NA20344
NA20346
NA20348
NA20351
NA20355
NA20356
NA20357
NA20359
NA20362
NA20412
-
HG02922
HG02923
HG02938
HG02941
HG02943
HG02944
HG02946
HG02947
HG02952
HG02953
HG02968
HG02970
HG02971
HG02973
HG02974
HG02976
HG02977
HG02979
HG02981
HG03099
HG03100
HG03103
HG03105
HG03108
HG03109
HG03111
HG03112
HG03114
HG03115
HG03117
HG03118
HG03120
HG03121
HG03123
HG03124
HG03126
HG03127
HG03129
HG03130
HG03132
HG03133
HG03135
HG03136
HG03139
HG03157
HG03159
HG03160
HG03162
HG03163
HG03166
HG03168
HG03169
HG03172
HG03175
HG03189
HG03190
HG03193
HG03195
HG03196
HG03198
HG03199
HG03202
HG03265
HG03267
HG03268
HG03270
HG03271
HG03279
HG03280
HG03291
HG03294
HG03295
HG03297
HG03298
HG03300
HG03301
HG03303
HG03304
HG03311
HG03313
HG03342
HG03343
HG03351
HG03352
HG03354
HG03363
HG03366
HG03367
HG03369
HG03370
HG03372
HG03499
HG03511
HG03514
HG03515
HG03517
HG03518
HG03520
HG03521
-
HG02461
HG02462
HG02464
HG02465
HG02561
HG02562
HG02568
HG02570
HG02571
HG02573
HG02574
HG02582
HG02583
HG02585
HG02586
HG02588
HG02589
HG02594
HG02595
HG02610
HG02611
HG02613
HG02614
HG02620
HG02621
HG02623
HG02624
HG02628
HG02629
HG02634
HG02635
HG02642
HG02643
HG02645
HG02646
HG02666
HG02667
HG02675
HG02676
HG02678
HG02679
HG02702
HG02703
HG02715
HG02716
HG02721
HG02722
HG02756
HG02757
HG02759
HG02760
HG02763
HG02768
HG02769
HG02771
HG02772
HG02798
HG02799
HG02804
HG02805
HG02807
HG02808
HG02810
HG02811
HG02813
HG02814
HG02816
HG02817
HG02819
HG02820
HG02836
HG02837
HG02839
HG02840
HG02851
HG02852
HG02854
HG02855
HG02860
HG02861
HG02870
HG02878
HG02879
HG02881
HG02882
HG02884
HG02885
HG02887
HG02888
HG02890
HG02891
HG02895
HG02896
HG02982
HG02983
HG03024
HG03025
HG03027
HG03028
HG03039
HG03040
HG03045
HG03046
HG03048
HG03049
HG03240
HG03241
HG03246
HG03247
HG03258
HG03259
HG03538
HG03539
-
NA19017
NA19019
NA19020
NA19023
NA19024
NA19025
NA19026
NA19027
NA19028
NA19030
NA19031
NA19035
NA19036
NA19037
NA19038
NA19041
NA19042
NA19043
NA19307
NA19308
NA19309
NA19310
NA19311
NA19312
NA19313
NA19314
NA19315
NA19316
NA19317
NA19318
NA19319
NA19320
NA19321
NA19323
NA19324
NA19327
NA19328
NA19331
NA19332
NA19334
NA19338
NA19346
NA19347
NA19350
NA19351
NA19355
NA19360
NA19372
NA19374
NA19375
NA19376
NA19377
NA19378
NA19379
NA19380
NA19383
NA19384
NA19385
NA19390
NA19391
NA19393
NA19394
NA19395
NA19397
NA19399
NA19401
NA19403
NA19404
NA19428
NA19429
NA19430
NA19431
NA19434
NA19435
NA19436
NA19437
NA19438
NA19439
NA19440
NA19443
NA19445
NA19446
NA19448
NA19449
NA19451
NA19452
NA19454
NA19455
NA19456
NA19457
NA19461
NA19462
NA19463
NA19466
NA19467
NA19468
NA19471
NA19472
NA19473
NA19474
NA19475
-
HG03052
HG03054
HG03055
HG03057
HG03058
HG03060
HG03061
HG03063
HG03064
HG03066
HG03069
HG03072
HG03073
HG03074
HG03077
HG03078
HG03079
HG03081
HG03082
HG03084
HG03085
HG03086
HG03088
HG03091
HG03095
HG03096
HG03097
HG03209
HG03212
HG03224
HG03225
HG03376
HG03378
HG03380
HG03382
HG03385
HG03388
HG03391
HG03394
HG03397
HG03401
HG03410
HG03419
HG03428
HG03432
HG03433
HG03436
HG03437
HG03439
HG03442
HG03445
HG03446
HG03449
HG03451
HG03452
HG03455
HG03457
HG03458
HG03460
HG03461
HG03464
HG03469
HG03470
HG03472
HG03473
HG03476
HG03478
HG03479
HG03484
HG03485
HG03547
HG03548
HG03556
HG03557
HG03558
HG03559
HG03563
HG03565
HG03567
HG03571
HG03572
HG03575
HG03577
HG03578
HG03583
-
NA18486
NA18488
NA18489
NA18498
NA18499
NA18501
NA18502
NA18504
NA18505
NA18507
NA18508
NA18510
NA18511
NA18516
NA18517
NA18519
NA18520
NA18522
NA18523
NA18853
NA18856
NA18858
NA18861
NA18864
NA18865
NA18867
NA18868
NA18870
NA18871
NA18873
NA18874
NA18876
NA18877
NA18878
NA18879
NA18881
NA18907
NA18908
NA18909
NA18910
NA18912
NA18915
NA18916
NA18917
NA18923
NA18924
NA18933
NA18934
NA19092
NA19093
NA19095
NA19096
NA19098
NA19099
NA19102
NA19107
NA19108
NA19113
NA19114
NA19116
NA19117
NA19118
NA19119
NA19121
NA19129
NA19130
NA19131
NA19137
NA19138
NA19141
NA19143
NA19144
NA19146
NA19147
NA19149
NA19152
NA19153
NA19159
NA19160
NA19171
NA19172
NA19175
NA19184
NA19185
NA19189
NA19190
NA19197
NA19198
NA19200
NA19201
NA19204
NA19206
NA19207
NA19209
NA19210
NA19213
NA19214
NA19222
NA19223
NA19225
NA19235
NA19236
NA19238
NA19239
NA19240
NA19247
NA19248
NA19256
NA19257
-
-
-
HG01112
HG01113
HG01119
HG01121
HG01122
HG01124
HG01125
HG01130
HG01131
HG01133
HG01134
HG01136
HG01137
HG01139
HG01140
HG01142
HG01148
HG01149
HG01250
HG01251
HG01253
HG01254
HG01256
HG01257
HG01259
HG01260
HG01269
HG01271
HG01272
HG01275
HG01277
HG01280
HG01281
HG01284
HG01341
HG01342
HG01344
HG01345
HG01348
HG01350
HG01351
HG01353
HG01354
HG01356
HG01357
HG01359
HG01360
HG01362
HG01363
HG01365
HG01366
HG01369
HG01372
HG01374
HG01375
HG01377
HG01378
HG01383
HG01384
HG01389
HG01390
HG01431
HG01432
HG01435
HG01437
HG01438
HG01440
HG01441
HG01443
HG01444
HG01447
HG01455
HG01456
HG01459
HG01461
HG01462
HG01464
HG01465
HG01468
HG01474
HG01479
HG01485
HG01486
HG01488
HG01489
HG01491
HG01492
HG01494
HG01495
HG01497
HG01498
HG01550
HG01551
HG01556
-
NA19648
NA19649
NA19651
NA19652
NA19654
NA19655
NA19657
NA19658
NA19660
NA19661
NA19663
NA19664
NA19669
NA19670
NA19675
NA19676
NA19678
NA19679
NA19681
NA19682
NA19684
NA19685
NA19716
NA19717
NA19719
NA19720
NA19722
NA19723
NA19725
NA19726
NA19728
NA19729
NA19731
NA19732
NA19734
NA19735
NA19740
NA19741
NA19746
NA19747
NA19749
NA19750
NA19752
NA19755
NA19756
NA19758
NA19759
NA19761
NA19762
NA19764
NA19770
NA19771
NA19773
NA19774
NA19776
NA19777
NA19779
NA19780
NA19782
NA19783
NA19785
NA19786
NA19788
NA19789
NA19792
NA19794
NA19795
-
HG01565
HG01566
HG01571
HG01572
HG01577
HG01578
HG01892
HG01893
HG01917
HG01918
HG01920
HG01921
HG01923
HG01924
HG01926
HG01927
HG01932
HG01933
HG01935
HG01936
HG01938
HG01939
HG01941
HG01942
HG01944
HG01945
HG01947
HG01948
HG01950
HG01951
HG01953
HG01954
HG01961
HG01965
HG01967
HG01968
HG01970
HG01971
HG01973
HG01974
HG01976
HG01977
HG01979
HG01980
HG01982
HG01983
HG01991
HG01992
HG01997
HG02002
HG02003
HG02006
HG02008
HG02089
HG02090
HG02102
HG02104
HG02105
HG02146
HG02147
HG02150
HG02252
HG02253
HG02259
HG02260
HG02262
HG02265
HG02266
HG02271
HG02272
HG02274
HG02275
HG02277
HG02278
HG02285
HG02286
HG02291
HG02292
HG02298
HG02299
HG02301
HG02304
HG02312
HG02345
HG02348
HG02425
-
HG00551
HG00553
HG00554
HG00637
HG00638
HG00640
HG00641
HG00731
HG00732
HG00733
HG00734
HG00736
HG00737
HG00739
HG00740
HG00742
HG00743
HG01047
HG01048
HG01049
HG01051
HG01052
HG01054
HG01055
HG01058
HG01060
HG01061
HG01063
HG01064
HG01066
HG01067
HG01069
HG01070
HG01072
HG01073
HG01075
HG01077
HG01079
HG01080
HG01082
HG01083
HG01085
HG01086
HG01088
HG01089
HG01092
HG01094
HG01095
HG01097
HG01098
HG01101
HG01102
HG01104
HG01105
HG01107
HG01108
HG01110
HG01111
HG01161
HG01162
HG01164
HG01167
HG01168
HG01170
HG01171
HG01173
HG01174
HG01176
HG01177
HG01182
HG01183
HG01187
HG01188
HG01190
HG01191
HG01197
HG01198
HG01200
HG01204
HG01205
HG01241
HG01242
HG01247
HG01248
HG01286
HG01302
HG01303
HG01305
HG01308
HG01311
HG01312
HG01323
HG01325
HG01326
HG01392
HG01393
HG01395
HG01396
HG01398
HG01402
HG01403
HG01405
HG01412
HG01413
HG01414
-
-
-
HG00759
HG00766
HG00844
HG00851
HG00864
HG00867
HG00879
HG00881
HG00956
HG00978
HG00982
HG01028
HG01029
HG01031
HG01046
HG01794
HG01795
HG01796
HG01797
HG01798
HG01799
HG01800
HG01801
HG01802
HG01804
HG01805
HG01806
HG01807
HG01808
HG01809
HG01810
HG01811
HG01812
HG01813
HG01815
HG01816
HG01817
HG02151
HG02152
HG02153
HG02154
HG02155
HG02156
HG02164
HG02165
HG02166
HG02178
HG02179
HG02180
HG02181
HG02182
HG02184
HG02185
HG02186
HG02187
HG02188
HG02190
HG02250
HG02351
HG02353
HG02355
HG02356
HG02360
HG02363
HG02364
HG02367
HG02371
HG02372
HG02373
HG02374
HG02375
HG02377
HG02379
HG02380
HG02381
HG02382
HG02383
HG02384
HG02385
HG02386
HG02387
HG02388
HG02389
HG02390
HG02391
HG02392
HG02394
HG02395
HG02396
HG02397
HG02398
HG02399
HG02401
HG02402
HG02406
HG02407
HG02408
HG02409
HG02410
-
NA18525
NA18526
NA18528
NA18530
NA18531
NA18532
NA18533
NA18534
NA18535
NA18536
NA18537
NA18538
NA18539
NA18541
NA18542
NA18543
NA18544
NA18545
NA18546
NA18547
NA18548
NA18549
NA18550
NA18552
NA18553
NA18555
NA18557
NA18558
NA18559
NA18560
NA18561
NA18562
NA18563
NA18564
NA18565
NA18566
NA18567
NA18570
NA18571
NA18572
NA18573
NA18574
NA18577
NA18579
NA18582
NA18591
NA18592
NA18593
NA18595
NA18596
NA18597
NA18599
NA18602
NA18603
NA18605
NA18606
NA18608
NA18609
NA18610
NA18611
NA18612
NA18613
NA18614
NA18615
NA18616
NA18617
NA18618
NA18619
NA18620
NA18621
NA18622
NA18623
NA18624
NA18625
NA18626
NA18627
NA18628
NA18629
NA18630
NA18631
NA18632
NA18633
NA18634
NA18635
NA18636
NA18637
NA18638
NA18639
NA18640
NA18641
NA18642
NA18643
NA18644
NA18645
NA18646
NA18647
NA18648
NA18740
NA18745
NA18747
NA18748
NA18749
NA18757
-
HG00403
HG00404
HG00406
HG00407
HG00409
HG00410
HG00419
HG00421
HG00422
HG00428
HG00436
HG00437
HG00442
HG00443
HG00445
HG00446
HG00448
HG00449
HG00451
HG00452
HG00457
HG00458
HG00463
HG00464
HG00472
HG00473
HG00475
HG00476
HG00478
HG00479
HG00500
HG00501
HG00513
HG00524
HG00525
HG00530
HG00531
HG00533
HG00534
HG00536
HG00537
HG00542
HG00543
HG00556
HG00557
HG00559
HG00560
HG00565
HG00566
HG00580
HG00581
HG00583
HG00584
HG00589
HG00590
HG00592
HG00593
HG00595
HG00596
HG00598
HG00599
HG00607
HG00608
HG00610
HG00611
HG00613
HG00614
HG00619
HG00620
HG00622
HG00623
HG00625
HG00626
HG00628
HG00629
HG00631
HG00632
HG00634
HG00635
HG00650
HG00651
HG00653
HG00654
HG00656
HG00657
HG00662
HG00663
HG00671
HG00672
HG00674
HG00675
HG00683
HG00684
HG00689
HG00690
HG00692
HG00693
HG00698
HG00699
HG00701
HG00702
HG00704
HG00705
HG00707
HG00708
HG00717
HG00728
HG00729
-
NA18939
NA18940
NA18941
NA18942
NA18943
NA18944
NA18945
NA18946
NA18947
NA18948
NA18949
NA18950
NA18951
NA18952
NA18953
NA18954
NA18956
NA18957
NA18959
NA18960
NA18961
NA18962
NA18963
NA18964
NA18965
NA18966
NA18967
NA18968
NA18969
NA18970
NA18971
NA18972
NA18973
NA18974
NA18975
NA18976
NA18977
NA18978
NA18979
NA18980
NA18981
NA18982
NA18983
NA18984
NA18985
NA18986
NA18987
NA18988
NA18989
NA18990
NA18991
NA18992
NA18993
NA18994
NA18995
NA18997
NA18998
NA18999
NA19000
NA19001
NA19002
NA19003
NA19004
NA19005
NA19006
NA19007
NA19009
NA19010
NA19011
NA19012
NA19054
NA19055
NA19056
NA19057
NA19058
NA19059
NA19060
NA19062
NA19063
NA19064
NA19065
NA19066
NA19067
NA19068
NA19070
NA19072
NA19074
NA19075
NA19076
NA19077
NA19078
NA19079
NA19080
NA19081
NA19082
NA19083
NA19084
NA19085
NA19086
NA19087
NA19088
NA19089
NA19090
NA19091
-
HG01595
HG01596
HG01597
HG01598
HG01599
HG01600
HG01840
HG01841
HG01842
HG01843
HG01844
HG01845
HG01846
HG01847
HG01848
HG01849
HG01850
HG01851
HG01852
HG01853
HG01855
HG01857
HG01858
HG01859
HG01860
HG01861
HG01862
HG01863
HG01864
HG01865
HG01866
HG01867
HG01868
HG01869
HG01870
HG01871
HG01872
HG01873
HG01874
HG01878
HG02016
HG02017
HG02019
HG02020
HG02023
HG02024
HG02025
HG02026
HG02028
HG02029
HG02031
HG02032
HG02035
HG02040
HG02046
HG02047
HG02048
HG02049
HG02050
HG02057
HG02058
HG02060
HG02061
HG02064
HG02067
HG02069
HG02070
HG02072
HG02073
HG02075
HG02076
HG02078
HG02079
HG02081
HG02082
HG02084
HG02085
HG02086
HG02087
HG02088
HG02113
HG02116
HG02121
HG02122
HG02127
HG02128
HG02130
HG02131
HG02133
HG02134
HG02136
HG02137
HG02138
HG02139
HG02140
HG02141
HG02142
HG02512
HG02513
HG02521
HG02522
-
-
-
NA06984
NA06985
NA06986
NA06989
NA06994
NA07000
NA07037
NA07048
NA07051
NA07056
NA07347
NA07357
NA10847
NA10851
NA11829
NA11830
NA11831
NA11832
NA11840
NA11843
NA11881
NA11892
NA11893
NA11894
NA11918
NA11919
NA11920
NA11930
NA11931
NA11932
NA11933
NA11992
NA11994
NA11995
NA12003
NA12004
NA12005
NA12006
NA12043
NA12044
NA12045
NA12046
NA12058
NA12144
NA12154
NA12155
NA12156
NA12234
NA12249
NA12272
NA12273
NA12275
NA12282
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Cumulative Coalescent Function (CCF)
How to interpret this figure?
Showing the inferred fraction of the genome shared between chromosome pairs
Download this figure in PNG format
Data shown in this figure can be downloaded from this page.
CCF | The cumulative coalescent function (CCF) describes the fraction a given target genome shares with a comparator genome due to common ancestry; the curve is monotonically increasing back in time. The CCF was inferred using a dynamic programming method which takes the alleles carried by the target genome, compares those to the alleles carried by the comparator genome, and infers the CCF based on the estimated age of the shared alleles. Here, allele age estimated using the joint clock model was applied throughout. |
Haplotypes A, B | The CCF is computed from the alleles shared between two haploid genomes; i.e. between the phased chromosomes of diploid individuals. Here, these are distnguished by arbitrarily (but consistently within a data set) labelling chromosomes as "A" and "B" per individual. |
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