HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

Unmatched Variant ID, using internal ID instead:
X2131722971
Alleles:
reference
T
–
alternate
C
–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome 10   position  31,722,971  (GRCh37)
Allele frequency in   SGDP ⇪
Sample 99.1%
0.9%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 100.0%
0.0%
OCN 90.0%
10.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Joint clock
Data source Estimated age of C allele # pairs = concordant + discordant Quality score
    Genomes in SGDP505.7 generations 103  =  7  +  961.000
Pairwise results table Joint clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Papuan-7A + B_Papuan-15B Concordant SGDP 31,458,983 – 32,701,643 1,242,659.5 0.86115841 22 1,286.4033 342.0
S_Papuan-3B + S_Papuan-7A Concordant SGDP 31,444,802 – 32,701,643 1,256,841.0 0.86778012 20 1,298.5078 308.0
S_Papuan-7B + B_Papuan-15B Concordant SGDP 31,458,983 – 32,701,643 1,242,659.5 0.86115841 24 1,286.4033 373.1
S_Papuan-1B + B_Papuan-15B Concordant SGDP 31,458,983 – 32,670,507 1,211,524.0 0.83610128 25 1,251.4125 399.5
S_Papuan-1B + S_Papuan-7B Concordant SGDP 31,095,432 – 33,231,997 2,136,565.0 1.09065267 14 1,899.0733 147.4
S_Papuan-3B + B_Papuan-15B Concordant SGDP 31,496,096 – 33,182,539 1,686,443.0 0.81343221 24 1,461.2384 328.5
S_Papuan-3B + S_Papuan-1B Concordant SGDP 31,444,802 – 32,671,573 1,226,771.0 0.84317668 22 1,264.3914 348.0
B_Papuan-15B + S_Mala-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Bougainville-1B Discordant SGDP 31,697,077 – 31,868,351 171,274.5 0.00857530 11 90.0720 2,442.5
B_Papuan-15B + B_Karitiana-3B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Adygei-1B Discordant SGDP 31,722,925 – 31,841,841 118,916.5 0.00606318 8 62.9305 2,542.5
B_Papuan-15B + S_Iranian-2A Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 4 15.9627 5,011.7
B_Papuan-15B + S_Georgian-1B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-3B + S_Mozabite-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Punjabi-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_English-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-3B + S_Tubalar-1A Discordant SGDP 31,041,075 – 31,723,008 681,933.0 0.36393407 79 619.4751 2,550.5
B_Papuan-15B + S_Hungarian-1B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-3B + B_Australian-4B Discordant SGDP 31,583,614 – 31,744,517 160,903.0 0.00455283 8 81.8757 1,954.2
B_Papuan-15B + S_Russian-1B Discordant SGDP 31,722,925 – 31,744,517 21,592.5 0.00072412 4 11.9437 6,698.1
S_Papuan-3B + S_Papuan-3A Discordant SGDP 31,134,695 – 31,752,325 617,629.5 0.24335655 54 492.1474 2,194.5
B_Papuan-15B + S_Turkish-2B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-3B + S_Papuan-5B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Karitiana-2B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-3B + S_Papuan-4A Discordant SGDP 31,134,695 – 32,701,105 1,566,410.0 0.97538007 205 1,533.1809 2,674.2
B_Papuan-15B + S_Kinh-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-3B + S_Papuan-14B Discordant SGDP 31,134,695 – 31,752,325 617,629.5 0.24335655 70 492.1474 2,844.7
B_Papuan-15B + S_Papuan-5A Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 5 15.9627 6,264.6
S_Papuan-3B + S_Papuan-2B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 13 147.3302 1,764.7
B_Papuan-15B + S_Brahui-2B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 7 147.3302 950.2
S_Papuan-3B + S_Khonda_Dora-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Bulgarian-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-3B + S_Burusho-2B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Finnish-3B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 8 147.3302 1,086.0
S_Papuan-3B + S_Estonian-1B Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 4 15.9627 5,011.7
B_Papuan-15B + S_Hungarian-2A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-3B + S_French-2A Discordant SGDP 31,106,698 – 31,723,008 616,310.5 0.28806701 79 527.2826 2,996.5
B_Papuan-15B + S_Icelandic-1B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-3B + S_Bergamo-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Kyrgyz-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-3B + S_Sardinian-1B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Lezgin-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-3B + S_Sardinian-2B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Spanish-2B Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 4 15.9627 5,011.7
S_Papuan-3B + S_Kyrgyz-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + B_Crete-1A Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 7 147.3302 950.2
S_Papuan-3B + S_Chechen-1B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Surui-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-3B + S_Lezgin-2B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Piapoco-1B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-3B + B_Papuan-15A Discordant SGDP 31,134,695 – 31,752,325 617,629.5 0.24335655 61 492.1474 2,478.9
B_Papuan-15B + S_Japanese-1A Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 10 147.3302 1,357.5
S_Papuan-1B + S_Papuan-9A Discordant SGDP 31,583,614 – 31,989,209 405,595.0 0.28178774 18 421.1158 854.9
B_Papuan-15B + B_Australian-3B Discordant SGDP 31,722,925 – 31,841,841 118,916.5 0.00606318 6 62.9305 1,906.9
S_Papuan-1B + S_Finnish-1B Discordant SGDP 31,722,925 – 31,868,351 145,426.5 0.00824186 10 77.3982 2,584.0
B_Papuan-15B + S_Papuan-8B Discordant SGDP 31,496,660 – 31,868,351 371,691.0 0.03014480 8 203.5275 786.1
S_Papuan-1B + S_Polish-1A Discordant SGDP 31,722,925 – 31,988,126 265,201.5 0.27147731 20 345.4786 1,157.8
B_Papuan-15B + S_Papuan-2A Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 4 15.9627 5,011.7
S_Papuan-7A + S_Maori-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Brahmin-1B Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 4 15.9627 5,011.7
S_Papuan-7A + S_Papuan-4B Discordant SGDP 31,496,660 – 31,981,099 484,439.0 0.27936222 23 457.0205 1,006.5
B_Papuan-15B + S_Hazara-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-7A + S_Papuan-12B Discordant SGDP 31,583,614 – 32,420,230 836,616.0 0.47448293 35 782.1620 895.0
B_Papuan-15B + S_Abkhasian-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
S_Papuan-7B + S_Mansi-2A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_English-1B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
S_Papuan-7B + S_Kalash-1B Discordant SGDP 31,097,746 – 32,048,924 951,177.5 0.63205012 71 963.2053 1,474.2
B_Papuan-15B + S_Estonian-2B Discordant SGDP 31,722,925 – 31,868,351 145,426.5 0.00824186 9 77.3982 2,325.6
B_Papuan-15B + S_Zapotec-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Saami-2B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Mixtec-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Greek-1A Discordant SGDP 31,722,925 – 31,868,351 145,426.5 0.00824186 8 77.3982 2,067.2
B_Papuan-15B + S_Mixtec-2A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Hungarian-1A Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 8 138.2450 1,157.4
B_Papuan-15B + S_Zapotec-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Icelandic-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Quechua-3A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Icelandic-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Quechua-2A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Kyrgyz-2A Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 7 138.2450 1,012.7
B_Papuan-15B + S_Quechua-2B Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Norwegian-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Tubalar-2A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Russian-2A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Tubalar-1B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 10 147.3302 1,357.5
B_Papuan-15B + S_North_Ossetian-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Yakut-2B Discordant SGDP 31,722,925 – 31,841,841 118,916.5 0.00606318 7 62.9305 2,224.7
B_Papuan-15B + S_Spanish-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Tlingit-2B Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Tajik-1A Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 4 15.9627 5,011.7
B_Papuan-15B + S_Mansi-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Turkish-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Even-1A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + B_Sardinian-3B Discordant SGDP 31,722,925 – 31,752,325 29,400.0 0.00106335 5 15.9627 6,264.6
B_Papuan-15B + S_Dai-3B Discordant SGDP 31,379,009 – 31,723,008 343,999.0 0.19085430 23 318.8030 1,442.9
B_Papuan-15B + B_Mixe-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Daur-2A Discordant SGDP 31,697,077 – 31,723,008 25,931.5 0.00033352 4 13.7139 5,833.5
B_Papuan-15B + S_Karitiana-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Tujia-2B Discordant SGDP 31,134,695 – 31,744,517 609,822.0 0.24301733 83 488.1284 3,400.7
B_Papuan-15B + S_Piapoco-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Yi-2B Discordant SGDP 31,722,925 – 31,841,841 118,916.5 0.00606318 7 62.9305 2,224.7
B_Papuan-15B + S_Piapoco-2A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
B_Papuan-15B + S_Tujia-1A Discordant SGDP 31,722,925 – 31,723,008 83.5 0.00000008 4 1.0401 76,912.4
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2026 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.