HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

Unmatched Variant ID, using internal ID instead:
X2131725101
Alleles:
reference
A
–
alternate
G
–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome 10   position  31,725,101  (GRCh37)
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 100.0%
0.0%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 98.7%
1.3%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Joint clock
Data source Estimated age of G allele # pairs = concordant + discordant Quality score
    Genomes in SGDP111.2 generations 94  =  1  +  931.000
Pairwise results table Joint clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Yemenite_Jew-1A + S_Yemenite_Jew-1B Concordant SGDP 30,233,227 – 32,547,632 2,314,405.0 2.87337953 7 3,410.6180 41.0
S_Yemenite_Jew-1B + S_Abkhasian-1A Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 10 170.5729 1,172.5
S_Yemenite_Jew-1B + S_Brahui-1A Discordant SGDP 31,548,099 – 32,451,906 903,806.5 0.49759921 50 832.9065 1,200.6
S_Yemenite_Jew-1B + S_Eskimo_Naukan-2B Discordant SGDP 31,687,839 – 31,792,748 104,908.5 0.00292191 7 53.6936 2,607.4
S_Yemenite_Jew-1B + S_Dusun-1B Discordant SGDP 31,687,839 – 31,725,135 37,296.0 0.00078422 5 19.5295 5,120.5
S_Yemenite_Jew-1B + S_Turkish-2B Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 16 351.6910 909.9
S_Yemenite_Jew-1B + S_Tuscan-2A Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 77 553.5829 2,781.9
S_Yemenite_Jew-1B + S_Iranian-1A Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 13 351.6910 739.3
S_Yemenite_Jew-1A + S_Han-1A Discordant SGDP 31,697,077 – 31,725,135 28,058.5 0.00033681 5 14.7375 6,785.4
S_Yemenite_Jew-1A + S_Naxi-3A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Yakut-2B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Even-3B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Tubalar-2A Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 12 170.5729 1,407.0
S_Yemenite_Jew-1A + S_Mongola-1A Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 14 170.5729 1,641.5
S_Yemenite_Jew-1A + S_Quechua-1A Discordant SGDP 31,725,090 – 31,792,748 67,658.0 0.00213777 6 35.1861 3,410.4
S_Yemenite_Jew-1B + S_English-2A Discordant SGDP 31,425,216 – 31,868,351 443,135.0 0.15419834 9 337.0635 534.0
S_Yemenite_Jew-1B + S_Basque-1B Discordant SGDP 31,134,695 – 31,795,978 661,282.5 0.24516534 64 514.5479 2,487.6
S_Yemenite_Jew-1A + S_Uygur-1B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Palestinian-3B Discordant SGDP 31,412,883 – 32,451,906 1,039,022.5 0.64286715 69 1,014.0245 1,360.9
S_Yemenite_Jew-1A + S_Uygur-2B Discordant SGDP 31,134,695 – 32,645,290 1,510,595.0 0.93003548 137 1,470.1140 1,863.8
S_Yemenite_Jew-1B + S_Lezgin-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 12 170.5729 1,407.0
S_Yemenite_Jew-1A + S_Burmese-2B Discordant SGDP 31,725,090 – 31,744,517 19,427.5 0.00072083 4 10.9019 7,338.2
S_Yemenite_Jew-1B + B_French-3B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Burmese-1B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Chukchi-1B Discordant SGDP 31,697,077 – 31,791,018 93,941.0 0.00209612 6 47.7686 2,512.1
S_Yemenite_Jew-1A + S_Thai-1B Discordant SGDP 31,548,099 – 31,744,517 196,418.0 0.01229720 9 105.1184 1,712.4
S_Yemenite_Jew-1B + S_Kusunda-1A Discordant SGDP 31,687,839 – 31,792,748 104,908.5 0.00292191 7 53.6936 2,607.4
S_Yemenite_Jew-1A + S_Thai-2A Discordant SGDP 31,092,468 – 31,868,351 775,883.5 0.30627664 73 618.4454 2,360.8
S_Yemenite_Jew-1B + S_Burusho-2A Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 9 170.5729 1,055.3
S_Yemenite_Jew-1A + S_Bougainville-2B Discordant SGDP 31,687,839 – 31,725,135 37,296.0 0.00078422 5 19.5295 5,120.5
S_Yemenite_Jew-1B + S_Bulgarian-1B Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 18 351.6910 1,023.6
S_Yemenite_Jew-1A + S_Papuan-8A Discordant SGDP 31,697,077 – 31,725,135 28,058.5 0.00033681 5 14.7375 6,785.4
S_Yemenite_Jew-1B + S_Finnish-1A Discordant SGDP 31,134,695 – 31,725,135 590,440.0 0.24229657 71 478.2485 2,969.2
S_Yemenite_Jew-1A + S_Irula-2A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Greek-2B Discordant SGDP 31,725,090 – 31,791,018 65,928.0 0.00175938 5 34.0529 2,936.6
S_Yemenite_Jew-1A + S_Mala-3A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Samaritan-1B Discordant SGDP 31,548,099 – 31,795,978 247,878.5 0.01444522 10 131.5379 1,520.5
S_Yemenite_Jew-1A + S_Brahmin-1B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Sardinian-1A Discordant SGDP 31,725,090 – 31,791,018 65,928.0 0.00175938 5 34.0529 2,936.6
S_Yemenite_Jew-1A + S_Madiga-1A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Polish-1A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Makrani-1A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Tajik-1B Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 17 351.6910 966.8
S_Yemenite_Jew-1A + S_Kalash-2A Discordant SGDP 31,687,839 – 31,725,135 37,296.0 0.00078422 5 19.5295 5,120.5
S_Yemenite_Jew-1B + S_Yemenite_Jew-2B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Sindhi-2A Discordant SGDP 31,134,695 – 31,795,978 661,282.5 0.24516534 66 514.5479 2,565.4
S_Yemenite_Jew-1A + S_Zapotec-1B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 12 170.5729 1,407.0
S_Yemenite_Jew-1A + S_Armenian-1A Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 16 351.6910 909.9
S_Yemenite_Jew-1B + S_Igorot-1A Discordant SGDP 31,548,099 – 33,231,339 1,683,239.5 0.80852987 112 1,455.7789 1,538.7
S_Yemenite_Jew-1A + S_Bulgarian-1B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 14 170.5729 1,641.5
S_Yemenite_Jew-1B + S_Eskimo_Naukan-1A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Saami-1B Discordant SGDP 31,725,090 – 32,451,906 726,816.0 0.48602283 54 738.6899 1,462.0
S_Yemenite_Jew-1B + S_Khonda_Dora-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 14 157.3398 1,779.6
S_Yemenite_Jew-1A + S_Saami-2B Discordant SGDP 31,725,090 – 31,791,018 65,928.0 0.00175938 5 34.0529 2,936.6
S_Yemenite_Jew-1B + S_Pathan-1A Discordant SGDP 31,725,090 – 31,791,018 65,928.0 0.00175938 5 34.0529 2,936.6
S_Yemenite_Jew-1A + S_Basque-1A Discordant SGDP 31,417,503 – 31,868,351 450,848.5 0.16187775 18 346.9095 1,037.7
S_Yemenite_Jew-1B + S_Makrani-2A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Icelandic-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 10 170.5729 1,172.5
S_Yemenite_Jew-1B + S_Punjabi-1B Discordant SGDP 31,687,839 – 31,725,135 37,296.0 0.00078422 5 19.5295 5,120.5
S_Yemenite_Jew-1A + S_Iranian-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 11 170.5729 1,289.8
S_Yemenite_Jew-1B + S_Armenian-2A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Iraqi_Jew-2A Discordant SGDP 31,725,090 – 31,791,018 65,928.0 0.00175938 5 34.0529 2,936.6
S_Yemenite_Jew-1B + S_Czech-2A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Druze-2B Discordant SGDP 31,548,099 – 32,451,906 903,806.5 0.49759921 57 832.9065 1,368.7
S_Yemenite_Jew-1B + S_Estonian-2B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_BedouinB-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 9 170.5729 1,055.3
S_Yemenite_Jew-1B + S_Finnish-1B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + S_Tuscan-2A Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 77 553.5829 2,781.9
S_Yemenite_Jew-1B + S_Georgian-1A Discordant SGDP 31,092,468 – 31,868,351 775,883.5 0.30627664 71 618.4454 2,296.1
S_Yemenite_Jew-1A + S_Jordanian-2B Discordant SGDP 31,725,090 – 31,744,517 19,427.5 0.00072083 4 10.9019 7,338.2
S_Yemenite_Jew-1B + S_Icelandic-1B Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 13 351.6910 739.3
S_Yemenite_Jew-1A + S_Orcadian-2A Discordant SGDP 31,725,090 – 31,744,517 19,427.5 0.00072083 4 10.9019 7,338.2
S_Yemenite_Jew-1B + S_Iraqi_Jew-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 15 170.5729 1,758.8
S_Yemenite_Jew-1A + S_Spanish-1B Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 16 351.6910 909.9
S_Yemenite_Jew-1B + S_Palestinian-2A Discordant SGDP 31,697,077 – 31,744,517 47,440.5 0.00105756 5 24.6175 4,062.2
S_Yemenite_Jew-1A + B_French-3A Discordant SGDP 31,425,216 – 32,451,906 1,026,689.5 0.63198261 29 999.3970 580.3
S_Yemenite_Jew-1B + S_Bergamo-2A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1A + B_Sardinian-3B Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Sardinian-1B Discordant SGDP 31,134,695 – 31,820,336 685,641.0 0.24612913 20 527.0110 759.0
S_Yemenite_Jew-1B + S_Mozabite-1A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Jordanian-2A Discordant SGDP 31,697,077 – 31,792,748 95,671.0 0.00247450 6 48.9017 2,453.9
S_Yemenite_Jew-1B + S_Mixe-2B Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 8 351.6910 454.9
S_Yemenite_Jew-1B + S_Russian-2A Discordant SGDP 31,725,090 – 31,744,517 19,427.5 0.00072083 4 10.9019 7,338.2
S_Yemenite_Jew-1B + S_Yakut-1B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 11 170.5729 1,289.8
S_Yemenite_Jew-1B + S_North_Ossetian-1A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 11 211.1397 1,042.0
S_Yemenite_Jew-1B + S_Ulchi-2A Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 13 170.5729 1,524.3
S_Yemenite_Jew-1B + S_Turkish-2A Discordant SGDP 31,421,613 – 31,868,351 446,738.0 0.15917269 14 342.7724 816.9
S_Yemenite_Jew-1B + S_Even-2A Discordant SGDP 31,565,428 – 31,725,135 159,707.0 0.00543240 10 82.0053 2,438.9
S_Yemenite_Jew-1B + S_Turkish-1A Discordant SGDP 31,412,883 – 31,868,351 455,468.0 0.16508289 14 351.6910 796.2
S_Yemenite_Jew-1B + S_Naxi-2B Discordant SGDP 31,548,099 – 31,744,517 196,418.0 0.01229720 8 105.1184 1,522.1
S_Yemenite_Jew-1B + B_Dai-4A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
S_Yemenite_Jew-1B + S_Tu-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 14 170.5729 1,641.5
S_Yemenite_Jew-1B + S_Pima-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 12 170.5729 1,407.0
S_Yemenite_Jew-1B + S_Korean-2A Discordant SGDP 31,725,090 – 31,725,135 45.5 0.00000008 4 1.0219 78,285.5
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2026 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.