Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
Unmatched Variant ID, using internal ID instead:
X2131823365
Alleles:
reference
A–
alternate
T–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome
10
position 31,823,365
(GRCh37)
Allele frequency in SGDP ⇪
Sample | 93.2% |
6.8% |
|
AFR |
100.0% |
0.0% |
|
AMR |
43.2% |
56.8% |
|
CAS |
96.3% |
3.7% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
97.4% |
2.6% |
|
WEA |
94.0% |
6.0% |
|
reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
Data source | Estimated age of T allele |
# pairs = concordant + discordant | Quality score |
---|---|---|---|
Genomes in SGDP | 2,282.8 generations | 193 = 93 + 100 | 0.760 |
Pairwise results table
Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
---|---|---|---|---|---|---|---|---|
S_Chane-1B + S_Quechua-2A | Concordant | SGDP | 31,431,250 – 31,906,050 |
474,799.5 |
0.26731851 |
10 | 228.9038 | 873.7 |
S_Piapoco-1A + S_Lezgin-1A | Concordant | SGDP | 31,031,900 – 31,984,793 |
952,893.0 |
0.65498556 |
48 | 458.3886 | 2,094.3 |
S_Orcadian-2A + B_Mixe-1A | Concordant | SGDP | 31,481,074 – 31,868,351 |
387,277.5 |
0.04113707 |
10 | 186.8932 | 1,070.1 |
S_Chane-1A + S_Mixtec-2B | Concordant | SGDP | 31,431,250 – 31,868,351 |
437,101.0 |
0.15080190 |
6 | 210.8085 | 569.2 |
S_Mayan-2A + S_Quechua-2B | Concordant | SGDP | 30,999,045 – 31,824,938 |
825,893.0 |
0.46315367 |
24 | 397.4286 | 1,207.8 |
S_Mayan-2B + S_Hazara-1B | Concordant | SGDP | 31,134,695 – 31,868,351 |
733,656.0 |
0.25053506 |
28 | 353.1549 | 1,585.7 |
S_Mixtec-1A + S_French-1A | Concordant | SGDP | 31,496,660 – 31,868,351 |
371,691.0 |
0.03014480 |
11 | 179.4117 | 1,226.2 |
S_Piapoco-2B + S_Pima-1A | Concordant | SGDP | 31,601,307 – 31,824,938 |
223,631.0 |
0.00733762 |
9 | 108.3429 | 1,661.4 |
S_Mixe-3B + S_Jordanian-2B | Concordant | SGDP | 31,481,074 – 31,841,841 |
360,767.5 |
0.03895839 |
9 | 174.1684 | 1,033.5 |
S_Mixtec-1A + S_Eskimo_Naukan-2A | Concordant | SGDP | 31,496,660 – 31,840,315 |
343,654.5 |
0.02765264 |
13 | 165.9542 | 1,566.7 |
S_Mixe-3B + S_French-1B | Concordant | SGDP | 31,134,695 – 31,841,172 |
706,476.5 |
0.24821890 |
30 | 340.1087 | 1,764.1 |
S_Mixe-3B + S_Zapotec-2A | Concordant | SGDP | 30,999,045 – 31,841,841 |
842,796.5 |
0.46496697 |
29 | 405.5423 | 1,430.2 |
S_Mixe-3A + B_Karitiana-3A | Concordant | SGDP | 31,445,059 – 31,906,050 |
460,991.0 |
0.25900855 |
10 | 222.2757 | 899.8 |
S_Piapoco-1B + S_Piapoco-2B | Concordant | SGDP | 31,409,719 – 31,868,351 |
458,632.0 |
0.16972096 |
13 | 221.1434 | 1,175.7 |
S_Mixtec-1A + S_Orcadian-2A | Concordant | SGDP | 31,496,660 – 31,868,351 |
371,691.0 |
0.03014480 |
12 | 179.4117 | 1,337.7 |
S_Piapoco-2B + S_Hazara-1A | Concordant | SGDP | 31,409,719 – 31,868,351 |
458,632.0 |
0.16972096 |
23 | 221.1434 | 2,080.1 |
S_Mixtec-1A + B_Karitiana-3B | Concordant | SGDP | 31,548,099 – 33,408,334 |
1,860,235.0 |
0.91182834 |
31 | 893.9128 | 693.6 |
S_Pima-1B + S_Mixe-3B | Concordant | SGDP | 31,820,336 – 31,824,938 |
4,601.5 |
0.00041394 |
1 | 3.2087 | 6,233.0 |
S_Mixtec-1B + S_Jordanian-2B | Concordant | SGDP | 31,565,428 – 31,868,351 |
302,923.0 |
0.01367089 |
3 | 146.4030 | 409.8 |
S_Mayan-2A + B_Mixe-1A | Concordant | SGDP | 31,134,695 – 31,824,938 |
690,242.5 |
0.24654308 |
17 | 332.3164 | 1,023.1 |
S_Mixtec-1B + S_Lezgin-1B | Concordant | SGDP | 31,565,428 – 31,841,841 |
276,413.0 |
0.01149221 |
4 | 133.6782 | 598.5 |
S_Mayan-2B + B_Karitiana-3B | Concordant | SGDP | 31,548,099 – 31,868,351 |
320,252.0 |
0.01981494 |
3 | 154.7210 | 387.8 |
S_Mixtec-2B + S_Eskimo_Naukan-2B | Concordant | SGDP | 31,496,660 – 31,900,053 |
403,392.5 |
0.13471637 |
5 | 194.6284 | 513.8 |
S_Lezgin-1B + B_Karitiana-3A | Concordant | SGDP | 31,481,074 – 31,841,841 |
360,767.5 |
0.03895839 |
13 | 174.1684 | 1,492.8 |
S_Mixtec-2B + S_French-1A | Concordant | SGDP | 31,583,614 – 31,868,351 |
284,737.0 |
0.01207056 |
4 | 137.6738 | 581.1 |
S_Chane-1A + S_Eskimo_Naukan-2A | Concordant | SGDP | 31,134,695 – 31,841,841 |
707,146.0 |
0.24835638 |
26 | 340.4301 | 1,527.5 |
S_Mixtec-2B + B_Karitiana-3B | Concordant | SGDP | 31,633,140 – 31,906,050 |
272,909.5 |
0.12689414 |
8 | 131.9966 | 1,212.2 |
S_Piapoco-1A + S_Mixe-3B | Concordant | SGDP | 30,999,045 – 31,971,296 |
972,251.0 |
0.70659152 |
37 | 467.6805 | 1,582.3 |
S_Mixtec-2B + B_Mixe-1A | Concordant | SGDP | 31,431,250 – 31,906,050 |
474,799.5 |
0.26731851 |
16 | 228.9038 | 1,398.0 |
S_Piapoco-1B + B_Karitiana-3A | Concordant | SGDP | 31,073,224 – 33,580,422 |
2,507,197.5 |
1.48158796 |
31 | 1,204.4548 | 514.8 |
S_Zapotec-2A + B_Karitiana-3A | Concordant | SGDP | 31,134,695 – 33,855,187 |
2,720,491.5 |
1.99633057 |
70 | 1,306.8359 | 1,071.3 |
S_Piapoco-2A + S_Mayan-2B | Concordant | SGDP | 31,431,250 – 31,868,351 |
437,101.0 |
0.15080190 |
9 | 210.8085 | 853.9 |
S_Zapotec-2B + S_Quechua-1A | Concordant | SGDP | 31,431,250 – 33,450,518 |
2,019,268.0 |
1.09189311 |
62 | 970.2486 | 1,278.0 |
S_Piapoco-2B + S_Lezgin-1A | Concordant | SGDP | 31,820,336 – 31,841,841 |
21,505.0 |
0.00222725 |
1 | 11.3224 | 1,766.4 |
S_Zapotec-2B + S_Hazara-1B | Concordant | SGDP | 31,409,719 – 31,824,938 |
415,218.5 |
0.16572898 |
15 | 200.3049 | 1,497.7 |
S_Pima-1A + S_Quechua-2B | Concordant | SGDP | 31,820,336 – 31,824,938 |
4,601.5 |
0.00041394 |
2 | 3.2087 | 12,466.0 |
S_Quechua-2A + S_Orcadian-2A | Concordant | SGDP | 31,496,660 – 31,868,351 |
371,691.0 |
0.03014480 |
13 | 179.4117 | 1,449.2 |
S_Pima-1B + S_Lezgin-1A | Concordant | SGDP | 31,820,336 – 31,824,938 |
4,601.5 |
0.00041394 |
2 | 3.2087 | 12,466.0 |
S_Quechua-2A + B_Mixe-1B | Concordant | SGDP | 31,431,250 – 31,841,841 |
410,591.0 |
0.14862322 |
21 | 198.0837 | 2,120.3 |
S_Mayan-2A + S_English-1B | Concordant | SGDP | 31,134,695 – 31,824,938 |
690,242.5 |
0.24654308 |
24 | 332.3164 | 1,444.4 |
S_Quechua-1A + S_Hazara-1A | Concordant | SGDP | 31,134,695 – 31,868,351 |
733,656.0 |
0.25053506 |
38 | 353.1549 | 2,152.0 |
S_Mayan-2B + S_Mixtec-1A | Concordant | SGDP | 31,134,695 – 31,868,351 |
733,656.0 |
0.25053506 |
30 | 353.1549 | 1,699.0 |
S_Quechua-1A + S_English-1B | Concordant | SGDP | 31,134,695 – 31,841,841 |
707,146.0 |
0.24835638 |
29 | 340.4301 | 1,703.7 |
S_Mayan-2B + S_Jordanian-2A | Concordant | SGDP | 31,281,000 – 32,051,343 |
770,343.0 |
0.56565560 |
32 | 370.7646 | 1,726.2 |
S_Quechua-1A + S_French-1A | Concordant | SGDP | 31,583,614 – 31,906,050 |
322,435.5 |
0.12858718 |
9 | 155.7690 | 1,155.6 |
S_Jordanian-2B + B_Karitiana-3B | Concordant | SGDP | 31,548,099 – 31,868,351 |
320,252.0 |
0.01981494 |
9 | 154.7210 | 1,163.4 |
S_Quechua-1A + B_Karitiana-3B | Concordant | SGDP | 31,792,748 – 31,868,351 |
75,603.5 |
0.00610080 |
2 | 37.2897 | 1,072.7 |
S_Lezgin-1A + B_Mixe-1B | Concordant | SGDP | 31,031,900 – 31,906,050 |
874,149.5 |
0.51590057 |
34 | 420.5918 | 1,616.8 |
S_Quechua-1A + B_Mixe-1B | Concordant | SGDP | 30,918,654 – 31,841,841 |
923,187.5 |
0.54334406 |
36 | 444.1300 | 1,621.1 |
S_Lezgin-1B + B_Karitiana-3B | Concordant | SGDP | 31,548,099 – 31,841,841 |
293,742.0 |
0.01763626 |
9 | 141.9962 | 1,267.6 |
S_Quechua-1B + S_Quechua-2A | Concordant | SGDP | 30,953,957 – 31,841,841 |
887,884.0 |
0.51086289 |
26 | 427.1843 | 1,217.3 |
S_Chane-1A + S_Quechua-1B | Concordant | SGDP | 31,431,250 – 31,841,841 |
410,591.0 |
0.14862322 |
12 | 198.0837 | 1,211.6 |
S_Quechua-1B + S_Hazara-1A | Concordant | SGDP | 31,437,117 – 31,841,172 |
404,054.5 |
0.14251289 |
16 | 194.9462 | 1,641.5 |
S_Chane-1A + S_Piapoco-1B | Concordant | SGDP | 30,918,171 – 31,868,351 |
950,180.0 |
0.55441676 |
17 | 457.0864 | 743.8 |
S_Quechua-1B + S_Jordanian-2A | Concordant | SGDP | 31,481,074 – 32,051,343 |
570,269.0 |
0.37564264 |
21 | 274.7291 | 1,528.8 |
S_Chane-1B + S_French-1B | Concordant | SGDP | 31,134,695 – 32,553,804 |
1,419,108.5 |
0.91049599 |
55 | 682.1721 | 1,612.5 |
S_Quechua-1B + S_Lezgin-1A | Concordant | SGDP | 31,425,216 – 31,906,050 |
480,833.5 |
0.27071496 |
11 | 231.8001 | 949.1 |
S_Piapoco-1A + S_English-1A | Concordant | SGDP | 31,068,515 – 32,448,679 |
1,380,164.0 |
0.81431880 |
69 | 663.4787 | 2,079.9 |
S_Eskimo_Naukan-2A + S_Jordanian-2B | Concordant | SGDP | 31,422,996 – 31,841,841 |
418,845.5 |
0.15583642 |
9 | 202.0458 | 890.9 |
S_Piapoco-1B + S_Jordanian-2B | Concordant | SGDP | 31,481,074 – 31,868,351 |
387,277.5 |
0.04113707 |
9 | 186.8932 | 963.1 |
S_Eskimo_Naukan-2A + S_Lezgin-1A | Concordant | SGDP | 31,135,093 – 31,906,050 |
770,956.5 |
0.36410839 |
24 | 371.0591 | 1,293.6 |
S_Piapoco-1B + B_Karitiana-3B | Concordant | SGDP | 31,548,099 – 31,983,119 |
435,019.5 |
0.27202819 |
5 | 209.8094 | 476.6 |
S_Eskimo_Naukan-2B + S_Hazara-1A | Concordant | SGDP | 31,134,695 – 31,900,053 |
765,357.5 |
0.35510662 |
37 | 368.3716 | 2,008.8 |
S_Piapoco-2A + B_Karitiana-3B | Concordant | SGDP | 31,548,099 – 31,983,119 |
435,019.5 |
0.27202819 |
6 | 209.8094 | 571.9 |
S_Eskimo_Naukan-2B + B_Karitiana-3A | Concordant | SGDP | 31,792,748 – 31,900,053 |
107,305.0 |
0.11067236 |
6 | 52.5064 | 2,285.4 |
S_Piapoco-2B + S_Quechua-2A | Concordant | SGDP | 31,431,250 – 31,868,351 |
437,101.0 |
0.15080190 |
19 | 210.8085 | 1,802.6 |
S_Eskimo_Naukan-2B + B_Mixe-1B | Concordant | SGDP | 31,134,695 – 31,841,841 |
707,146.0 |
0.24835638 |
31 | 340.4301 | 1,821.2 |
S_Piapoco-2B + S_Hazara-1B | Concordant | SGDP | 31,431,250 – 31,868,351 |
437,101.0 |
0.15080190 |
6 | 210.8085 | 569.2 |
S_Hazara-1A + S_Jordanian-2A | Concordant | SGDP | 31,289,787 – 31,906,050 |
616,262.5 |
0.34536274 |
28 | 296.8060 | 1,886.8 |
S_Piapoco-2B + B_Mixe-1B | Concordant | SGDP | 31,409,719 – 31,841,841 |
432,122.0 |
0.16754228 |
18 | 208.4186 | 1,727.3 |
S_Hazara-1A + B_Karitiana-3A | Concordant | SGDP | 31,112,961 – 31,984,793 |
871,832.0 |
0.54215616 |
46 | 419.4794 | 2,193.2 |
S_Pima-1A + S_Zapotec-2B | Concordant | SGDP | 31,481,074 – 32,529,177 |
1,048,103.5 |
0.68116329 |
16 | 504.0897 | 634.8 |
S_Hazara-1B + S_Jordanian-2A | Concordant | SGDP | 31,630,246 – 32,452,204 |
821,958.0 |
0.49269892 |
24 | 395.5398 | 1,213.5 |
S_Pima-1A + B_Karitiana-3B | Concordant | SGDP | 31,218,355 – 31,824,938 |
606,583.0 |
0.23108619 |
31 | 292.1598 | 2,122.1 |
S_Hazara-1B + B_Mixe-1A | Concordant | SGDP | 31,134,695 – 31,906,050 |
771,354.5 |
0.36705168 |
25 | 371.2502 | 1,346.8 |
S_Pima-1B + S_Quechua-2A | Concordant | SGDP | 31,820,336 – 31,824,938 |
4,601.5 |
0.00041394 |
2 | 3.2087 | 12,466.0 |
S_English-1A + B_Karitiana-3B | Concordant | SGDP | 31,636,829 – 32,448,679 |
811,849.5 |
0.48404780 |
38 | 390.6878 | 1,945.3 |
S_Pima-1B + B_Mixe-1B | Concordant | SGDP | 31,820,336 – 33,364,766 |
1,544,430.0 |
0.87263110 |
51 | 742.3264 | 1,374.1 |
S_English-1B + S_Jordanian-2B | Concordant | SGDP | 31,481,074 – 31,906,050 |
424,976.0 |
0.15765369 |
9 | 204.9885 | 878.1 |
S_Mayan-2A + S_Eskimo_Naukan-2B | Concordant | SGDP | 31,094,427 – 31,824,938 |
730,511.0 |
0.29829067 |
24 | 351.6453 | 1,365.0 |
S_English-1B + B_Karitiana-3A | Concordant | SGDP | 31,134,695 – 31,841,841 |
707,146.0 |
0.24835638 |
28 | 340.4301 | 1,645.0 |
S_Mayan-2A + S_French-1B | Concordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
29 | 331.5642 | 1,749.3 |
S_French-1A + B_Mixe-1A | Concordant | SGDP | 31,481,074 – 31,868,351 |
387,277.5 |
0.04113707 |
9 | 186.8932 | 963.1 |
S_Mayan-2B + S_Mixe-3A | Concordant | SGDP | 31,409,719 – 32,068,238 |
658,519.0 |
0.54259469 |
11 | 317.0891 | 693.8 |
S_Jordanian-2A + S_Jordanian-2B | Concordant | SGDP | 31,431,250 – 31,868,351 |
437,101.0 |
0.15080190 |
10 | 210.8085 | 948.7 |
S_Mayan-2B + S_Quechua-2A | Concordant | SGDP | 31,431,250 – 31,868,351 |
437,101.0 |
0.15080190 |
14 | 210.8085 | 1,328.2 |
S_Jordanian-2A + B_Mixe-1B | Concordant | SGDP | 31,281,000 – 32,452,204 |
1,171,204.5 |
0.71337120 |
44 | 563.1782 | 1,562.6 |
S_Mayan-2B + S_English-1B | Concordant | SGDP | 31,134,695 – 31,841,841 |
707,146.0 |
0.24835638 |
30 | 340.4301 | 1,762.5 |
S_Jordanian-2B + S_Orcadian-2A | Concordant | SGDP | 30,953,957 – 32,452,204 |
1,498,247.0 |
0.99526274 |
7 | 720.1586 | 194.4 |
S_Mayan-2B + S_Orcadian-2A | Concordant | SGDP | 31,548,099 – 31,868,351 |
320,252.0 |
0.01981494 |
10 | 154.7210 | 1,292.6 |
S_Mayan-2B + B_Mixe-1A | Concordant | SGDP | 30,953,957 – 31,868,351 |
914,394.0 |
0.51304157 |
24 | 439.9091 | 1,091.1 |
S_Mixe-3A + S_Hazara-1A | Concordant | SGDP | 31,409,719 – 31,906,050 |
496,330.5 |
0.28623758 |
22 | 239.2386 | 1,839.2 |
S_Mixe-3A + S_French-1A | Concordant | SGDP | 31,481,074 – 31,868,351 |
387,277.5 |
0.04113707 |
7 | 186.8932 | 749.1 |
S_Hazara-1B + S_Pima-2A | Discordant | SGDP | 31,823,364 – 32,451,906 |
628,541.5 |
0.48192741 |
44 | 302.6999 | 2,907.2 |
S_Hazara-1B + S_Sardinian-1A | Discordant | SGDP | 31,032,459 – 31,868,351 |
835,892.0 |
0.39159157 |
58 | 402.2282 | 2,883.9 |
S_Hazara-1B + S_Itelman-1B | Discordant | SGDP | 31,134,695 – 31,868,351 |
733,656.0 |
0.25053506 |
26 | 353.1549 | 1,472.4 |
S_Hazara-1A + S_Burusho-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
B_Mixe-1A + S_Turkish-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Jordanian-2A + S_Pathan-1A | Discordant | SGDP | 31,583,614 – 31,868,351 |
284,737.0 |
0.01207056 |
8 | 137.6738 | 1,162.2 |
S_French-1A + S_Kalash-2A | Discordant | SGDP | 31,601,307 – 31,823,371 |
222,064.0 |
0.00718657 |
10 | 107.5907 | 1,858.9 |
S_Mixtec-2B + S_Even-2A | Discordant | SGDP | 31,795,978 – 31,823,371 |
27,393.0 |
0.00122668 |
2 | 14.1486 | 2,827.1 |
S_Mixtec-2B + S_Altaian-1A | Discordant | SGDP | 31,134,695 – 31,868,351 |
733,656.0 |
0.25053506 |
19 | 353.1549 | 1,076.0 |
S_Mixtec-2B + S_Mongola-1B | Discordant | SGDP | 31,744,517 – 31,868,351 |
123,834.0 |
0.00751774 |
3 | 60.4403 | 992.7 |
S_Piapoco-2B + S_Tujia-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Chane-1B + S_Mala-3A | Discordant | SGDP | 31,823,364 – 31,863,816 |
40,452.0 |
0.00293269 |
2 | 20.4170 | 1,959.2 |
S_English-1B + S_Orcadian-1A | Discordant | SGDP | 31,548,099 – 31,823,371 |
275,271.5 |
0.01567190 |
10 | 133.1303 | 1,502.3 |
S_Mixtec-2B + S_Ami-2B | Discordant | SGDP | 31,795,978 – 31,823,371 |
27,393.0 |
0.00122668 |
2 | 14.1486 | 2,827.1 |
S_English-1B + S_North_Ossetian-2A | Discordant | SGDP | 31,032,459 – 31,823,371 |
790,911.5 |
0.38744854 |
59 | 380.6375 | 3,100.1 |
S_Mixtec-2B + B_Australian-4B | Discordant | SGDP | 31,796,722 – 31,823,371 |
26,648.5 |
0.00071095 |
2 | 13.7913 | 2,900.4 |
S_French-1B + S_Tuscan-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mixtec-2B + S_Papuan-1A | Discordant | SGDP | 31,795,978 – 31,868,351 |
72,373.5 |
0.00536972 |
3 | 35.7393 | 1,678.8 |
S_Lezgin-1A + S_Kyrgyz-2B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mixtec-2B + S_Yadava-1A | Discordant | SGDP | 31,795,978 – 31,823,371 |
27,393.0 |
0.00122668 |
2 | 14.1486 | 2,827.1 |
S_Chane-1A + S_Pima-2A | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
2 | 22.5938 | 1,770.4 |
S_Mixtec-2B + S_Punjabi-2B | Discordant | SGDP | 31,687,839 – 31,868,351 |
180,512.0 |
0.00902271 |
4 | 87.6458 | 912.8 |
S_Hazara-1B + S_Zapotec-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mixtec-2B + S_Lezgin-2B | Discordant | SGDP | 31,687,839 – 31,823,371 |
135,531.5 |
0.00487967 |
6 | 66.0551 | 1,816.7 |
S_Hazara-1B + S_Estonian-2B | Discordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
45 | 331.5642 | 2,714.4 |
S_Mixtec-2B + S_Adygei-2A | Discordant | SGDP | 31,583,614 – 31,823,371 |
239,756.5 |
0.00792752 |
7 | 116.0831 | 1,206.0 |
S_Hazara-1B + S_North_Ossetian-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mixtec-2B + S_Tajik-2B | Discordant | SGDP | 31,687,839 – 31,823,371 |
135,531.5 |
0.00487967 |
5 | 66.0551 | 1,513.9 |
S_English-1A + S_Hungarian-2A | Discordant | SGDP | 31,755,646 – 31,823,371 |
67,725.0 |
0.00246695 |
4 | 33.5080 | 2,387.5 |
S_Zapotec-2A + S_Aleut-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_English-1B + S_Russian-1B | Discordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
57 | 331.5642 | 3,438.2 |
S_Zapotec-2B + S_Zapotec-1A | Discordant | SGDP | 31,041,075 – 31,823,371 |
782,295.5 |
0.36803281 |
37 | 376.5018 | 1,965.5 |
S_French-1A + S_Relli-2A | Discordant | SGDP | 31,795,978 – 31,823,371 |
27,393.0 |
0.00122668 |
2 | 14.1486 | 2,827.1 |
S_Zapotec-2B + S_Mixtec-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_French-1A + S_Finnish-1A | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
3 | 22.5938 | 2,655.6 |
S_Zapotec-2B + S_Tubalar-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Jordanian-2A + S_Yakut-2A | Discordant | SGDP | 31,484,549 – 31,868,351 |
383,802.0 |
0.03239346 |
10 | 185.2250 | 1,079.8 |
S_Quechua-2A + S_Quechua-3A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Orcadian-2A + S_Palestinian-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Quechua-2A + S_Mala-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
B_Karitiana-3B + S_Tlingit-2B | Discordant | SGDP | 31,073,594 – 31,823,371 |
749,776.5 |
0.32370888 |
31 | 360.8927 | 1,718.0 |
S_Quechua-2B + S_Bergamo-1B | Discordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
42 | 331.5642 | 2,533.4 |
S_Chane-1A + S_Altaian-1A | Discordant | SGDP | 31,548,099 – 31,868,351 |
320,252.0 |
0.01981494 |
7 | 154.7210 | 904.9 |
S_Quechua-2B + S_Sardinian-1A | Discordant | SGDP | 31,134,695 – 31,868,351 |
733,656.0 |
0.25053506 |
39 | 353.1549 | 2,208.7 |
S_Chane-1B + S_Korean-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Quechua-2B + S_Surui-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Hazara-1A + S_Jordanian-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Quechua-2B + S_Karitiana-2A | Discordant | SGDP | 31,795,978 – 31,823,371 |
27,393.0 |
0.00122668 |
2 | 14.1486 | 2,827.1 |
S_Hazara-1B + S_Yakut-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Quechua-1A + S_Iraqi_Jew-1A | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
3 | 22.5938 | 2,655.6 |
S_Hazara-1B + S_Bulgarian-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Eskimo_Naukan-2A + S_Han-1A | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
3 | 22.5938 | 2,655.6 |
S_Hazara-1B + S_Iranian-1A | Discordant | SGDP | 31,687,839 – 31,823,371 |
135,531.5 |
0.00487967 |
5 | 66.0551 | 1,513.9 |
S_Eskimo_Naukan-2A + S_Uygur-1A | Discordant | SGDP | 31,031,900 – 31,823,371 |
791,470.5 |
0.39524092 |
66 | 380.9058 | 3,465.4 |
S_Hazara-1B + S_Abkhasian-2B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Eskimo_Naukan-2A + S_Burmese-2A | Discordant | SGDP | 31,041,075 – 31,868,351 |
827,276.0 |
0.37217585 |
69 | 398.0925 | 3,466.5 |
S_Hazara-1B + S_Turkish-1A | Discordant | SGDP | 31,687,839 – 31,823,371 |
135,531.5 |
0.00487967 |
6 | 66.0551 | 1,816.7 |
S_Eskimo_Naukan-2A + S_Thai-1B | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
2 | 22.5938 | 1,770.4 |
S_English-1A + S_Punjabi-1A | Discordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
51 | 331.5642 | 3,076.3 |
S_Eskimo_Naukan-2A + S_Bengali-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_English-1B + S_Papuan-2B | Discordant | SGDP | 31,823,364 – 32,051,056 |
227,691.5 |
0.33722631 |
16 | 110.2919 | 2,901.4 |
S_Eskimo_Naukan-2A + S_Atayal-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_English-1B + S_Polish-1B | Discordant | SGDP | 31,823,364 – 31,988,126 |
164,762.0 |
0.26737859 |
12 | 80.0858 | 2,996.8 |
S_Eskimo_Naukan-2A + S_Saami-1A | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
3 | 22.5938 | 2,655.6 |
S_English-1B + S_Russian-2A | Discordant | SGDP | 31,134,695 – 33,038,235 |
1,903,539.5 |
1.02300983 |
112 | 914.6990 | 2,448.9 |
S_Eskimo_Naukan-2B + S_Dusun-1A | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
3 | 22.5938 | 2,655.6 |
S_French-1A + S_Chukchi-1A | Discordant | SGDP | 31,548,099 – 31,823,371 |
275,271.5 |
0.01567190 |
7 | 133.1303 | 1,051.6 |
S_Eskimo_Naukan-2B + S_Mala-3B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_French-1A + S_Madiga-2A | Discordant | SGDP | 31,496,660 – 31,823,371 |
326,710.5 |
0.02600177 |
8 | 157.8210 | 1,013.8 |
S_Eskimo_Naukan-2B + S_Madiga-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_French-1A + S_English-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Eskimo_Naukan-2B + S_Brahui-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_French-1B + S_Greek-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Eskimo_Naukan-2B + S_Iraqi_Jew-2A | Discordant | SGDP | 31,113,444 – 31,868,351 |
754,907.5 |
0.28431234 |
56 | 363.3556 | 3,082.4 |
S_French-1B + S_Karitiana-1B | Discordant | SGDP | 31,134,695 – 32,701,105 |
1,566,410.0 |
0.97538007 |
140 | 752.8768 | 3,719.1 |
S_Eskimo_Naukan-2B + S_Russian-2B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Jordanian-2A + S_Maori-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Eskimo_Naukan-2B + S_Yemenite_Jew-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Jordanian-2A + S_Albanian-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Hazara-1A + S_Mixe-2B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Lezgin-1A + S_Papuan-5B | Discordant | SGDP | 31,823,364 – 32,548,181 |
724,817.0 |
0.65215514 |
47 | 348.9122 | 2,694.1 |
S_Hazara-1A + S_Tlingit-1B | Discordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
54 | 331.5642 | 3,257.3 |
B_Karitiana-3A + S_Karitiana-1B | Discordant | SGDP | 31,075,226 – 31,823,371 |
748,144.5 |
0.32189014 |
48 | 360.1094 | 2,665.9 |
S_Hazara-1A + S_Aleut-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
B_Mixe-1A + S_Chukchi-1B | Discordant | SGDP | 31,041,075 – 31,823,371 |
782,295.5 |
0.36803281 |
24 | 376.5018 | 1,274.9 |
S_Hazara-1A + S_Eskimo_Naukan-1B | Discordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
57 | 331.5642 | 3,438.2 |
B_Mixe-1B + S_Punjabi-1A | Discordant | SGDP | 31,134,695 – 32,529,177 |
1,394,482.0 |
0.89056128 |
113 | 670.3514 | 3,371.4 |
S_Hazara-1A + S_Brahmin-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Chane-1A + S_Yi-2B | Discordant | SGDP | 31,823,364 – 32,452,204 |
628,840.0 |
0.48636431 |
28 | 302.8432 | 1,849.1 |
S_Hazara-1A + S_Makrani-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Chane-1B + S_Ulchi-1B | Discordant | SGDP | 31,134,695 – 31,823,371 |
688,675.5 |
0.24639202 |
60 | 331.5642 | 3,619.2 |
S_Chane-1B + S_Even-3B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Chane-1B + S_She-2A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mixtec-1A + S_Tubalar-1A | Discordant | SGDP | 31,823,364 – 31,868,351 |
44,987.0 |
0.00414314 |
4 | 22.5938 | 3,540.8 |
S_Chane-1B + S_Bougainville-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mixtec-1A + S_Bulgarian-2A | Discordant | SGDP | 31,795,978 – 31,823,371 |
27,393.0 |
0.00122668 |
2 | 14.1486 | 2,827.1 |
S_Piapoco-1B + S_Norwegian-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mixtec-1A + S_Georgian-1A | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
S_Mayan-2A + S_Iraqi_Jew-2A | Discordant | SGDP | 31,113,444 – 31,823,371 |
709,927.0 |
0.28016930 |
43 | 341.7650 | 2,516.3 |
S_Mixtec-1A + B_Crete-1B | Discordant | SGDP | 31,823,364 – 31,823,371 |
6.5 |
0.00000010 |
2 | 1.0031 | 39,875.6 |
Data shown in this table can be downloaded from this page.
α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
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