Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
Unmatched Variant ID, using internal ID instead:
X436525854
Alleles:
reference
C–
alternate
A–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome
2
position 136,525,854 (GRCh37)
Allele frequency in SGDP ⇪
| Sample | 99.6% |
0.4% |
|
AFR |
97.7% |
2.3% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
| reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
| Data source | Estimated age of A allele |
# pairs = concordant + discordant | Quality score |
|---|---|---|---|
| Genomes in SGDP | 1,619.1 generations | 98 = 1 + 97 | 1.000 |
Pairwise results table
| Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
|---|---|---|---|---|---|---|---|---|
| S_Ju_hoan_North-3B + S_Ju_hoan_North-2A | Concordant | SGDP | 136,411,978 – 137,134,850 |
722,872.5 |
0.65142718 |
21 | 347.9788 | 1,207.0 |
| S_Ju_hoan_North-2A + S_Irula-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Mozabite-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Eskimo_Chaplin-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Karitiana-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Tajik-2A | Discordant | SGDP | 136,494,791 – 136,739,216 |
244,424.5 |
0.03228080 |
26 | 118.3238 | 4,394.7 |
| S_Ju_hoan_North-2A + S_Icelandic-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_English-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Xibo-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Oroqen-2A | Discordant | SGDP | 136,493,766 – 136,739,216 |
245,450.0 |
0.03252613 |
27 | 118.8160 | 4,544.8 |
| S_Ju_hoan_North-3B + S_Mansi-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Tlingit-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Eskimo_Chaplin-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Even-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Aleut-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Brahui-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Abkhasian-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Yi-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Finnish-3B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Chukchi-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Jordanian-3A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Itelman-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + B_Dai-4A | Discordant | SGDP | 136,493,766 – 136,762,052 |
268,286.0 |
0.03370694 |
27 | 129.7773 | 4,161.0 |
| S_Ju_hoan_North-3B + S_Eskimo_Naukan-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Ulchi-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Somali-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Even-1B | Discordant | SGDP | 136,525,764 – 136,762,052 |
236,287.5 |
0.02966598 |
32 | 114.4180 | 5,593.5 |
| S_Ju_hoan_North-3B + S_Makrani-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Kinh-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Burusho-1B | Discordant | SGDP | 135,759,069 – 136,762,052 |
1,002,983.0 |
0.09320676 |
117 | 482.4318 | 4,850.4 |
| S_Ju_hoan_North-2A + S_Pathan-1B | Discordant | SGDP | 136,476,284 – 136,762,052 |
285,767.5 |
0.03668983 |
25 | 138.1684 | 3,618.8 |
| S_Ju_hoan_North-3B + S_Burusho-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Punjabi-3B | Discordant | SGDP | 136,493,766 – 136,750,428 |
256,662.0 |
0.03265136 |
25 | 124.1978 | 4,025.8 |
| S_Ju_hoan_North-3B + S_Hazara-1A | Discordant | SGDP | 136,494,791 – 136,554,977 |
60,185.5 |
0.00716495 |
6 | 29.8890 | 4,014.8 |
| S_Ju_hoan_North-2A + S_Atayal-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Sindhi-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Estonian-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Punjabi-2A | Discordant | SGDP | 136,493,766 – 136,739,216 |
245,450.0 |
0.03252613 |
28 | 118.8160 | 4,713.2 |
| S_Ju_hoan_North-2A + S_Basque-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Bulgarian-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Sardinian-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Bulgarian-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Adygei-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Bulgarian-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Yemenite_Jew-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_English-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + B_Sardinian-3A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_English-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_BantuHerero-1B | Discordant | SGDP | 136,493,766 – 136,762,052 |
268,286.0 |
0.03370694 |
28 | 129.7773 | 4,315.1 |
| S_Ju_hoan_North-3B + S_Estonian-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Eskimo_Sireniki-1B | Discordant | SGDP | 136,525,764 – 136,762,052 |
236,287.5 |
0.02966598 |
33 | 114.4180 | 5,768.3 |
| S_Ju_hoan_North-3B + S_Finnish-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Aleut-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Finnish-3A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Oroqen-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_BantuKenya-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Uygur-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_French-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Eskimo_Sireniki-2A | Discordant | SGDP | 136,476,284 – 136,762,052 |
285,767.5 |
0.03668983 |
30 | 138.1684 | 4,342.5 |
| S_Ju_hoan_North-3B + S_French-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Brahmin-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Basque-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Balochi-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Georgian-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Burusho-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Greek-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Punjabi-4B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Icelandic-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Albanian-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Iranian-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_English-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Palestinian-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Estonian-2A | Discordant | SGDP | 136,476,284 – 136,677,400 |
201,116.0 |
0.03439504 |
18 | 97.5357 | 3,691.0 |
| S_Ju_hoan_North-3B + S_Tuscan-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Estonian-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Norwegian-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Saami-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Orcadian-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Hungarian-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Orcadian-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Bergamo-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_North_Ossetian-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Tuscan-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Spanish-1B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Orcadian-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Spanish-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Spanish-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Tajik-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Yemenite_Jew-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + B_Karitiana-3B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + B_Crete-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-3B + S_Saharawi-2A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + B_Papuan-15A | Discordant | SGDP | 136,493,766 – 136,750,428 |
256,662.0 |
0.03265136 |
24 | 124.1978 | 3,864.8 |
| S_Ju_hoan_North-2A + S_Mozabite-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Chane-1A | Discordant | SGDP | 136,493,766 – 136,750,428 |
256,662.0 |
0.03265136 |
24 | 124.1978 | 3,864.8 |
| S_Ju_hoan_North-2A + S_Mixe-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Pima-1A | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
| S_Ju_hoan_North-2A + S_Mongola-2B | Discordant | SGDP | 136,525,764 – 136,525,855 |
91.0 |
0.00000687 |
2 | 1.0437 | 38,325.9 |
Data shown in this table can be downloaded from this page.
| α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
|---|
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