HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

Unmatched Variant ID, using internal ID instead:
X436632766
Alleles:
reference
T
–
alternate
C
–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome 2   position  136,632,766  (GRCh37)
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 97.7%
2.3%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 100.0%
0.0%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Mutation clock
Data source Estimated age of C allele # pairs = concordant + discordant Quality score
    Genomes in SGDP952.1 generations 97  =  1  +  961.000
Pairwise results table Mutation clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Khomani_San-2A + S_Khomani_San-2B Concordant SGDP 135,755,745 – 136,781,557 1,025,812.0 0.16248506 18 493.3898 729.6
S_Khomani_San-2B + S_Mansi-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Kinh-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Hezhen-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Pima-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_North_Ossetian-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Samaritan-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Estonian-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Naxi-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Cambodian-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Mansi-1A Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 18 83.7304 4,299.5
S_Khomani_San-2A + S_Eskimo_Sireniki-1A Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 14 77.9634 3,591.4
S_Khomani_San-2A + S_Mixtec-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Mixe-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Punjabi-3B Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 11 83.7304 2,627.5
S_Khomani_San-2B + S_Czech-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Miao-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Saami-2B Discordant SGDP 136,563,445 – 136,762,052 198,607.0 0.02158089 16 96.3314 3,321.9
S_Khomani_San-2A + S_Oroqen-1B Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 15 77.9634 3,848.0
S_Khomani_San-2B + S_Orcadian-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Oroqen-2B Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 16 77.9634 4,104.5
S_Khomani_San-2B + B_Karitiana-3A Discordant SGDP 136,590,087 – 136,735,800 145,712.5 0.01681350 12 70.9420 3,383.0
S_Khomani_San-2A + S_Xibo-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Aleut-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Dusun-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Yi-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Itelman-1A Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 15 77.9634 3,848.0
S_Khomani_San-2B + S_Eskimo_Naukan-2A Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 11 77.9634 2,821.8
S_Khomani_San-2A + S_Madiga-1A Discordant SGDP 136,619,416 – 136,762,052 142,636.0 0.01397324 13 69.4653 3,742.9
S_Khomani_San-2B + S_Somali-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Brahmin-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Abkhasian-1B Discordant SGDP 136,568,364 – 136,735,800 167,436.0 0.02019511 10 81.3693 2,457.9
S_Khomani_San-2A + S_Burusho-1A Discordant SGDP 136,619,416 – 136,762,052 142,636.0 0.01397324 14 69.4653 4,030.8
S_Khomani_San-2B + S_English-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Sindhi-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Finnish-1B Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 12 83.7304 2,866.3
S_Khomani_San-2A + S_Punjabi-2A Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 18 83.7304 4,299.5
S_Khomani_San-2B + S_Icelandic-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Bulgarian-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Sardinian-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Bulgarian-1B Discordant SGDP 136,563,445 – 136,714,614 151,169.0 0.02015013 13 73.5611 3,534.5
S_Khomani_San-2B + S_Polish-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Atayal-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_North_Ossetian-2B Discordant SGDP 136,568,364 – 136,642,220 73,856.5 0.01276542 4 36.4511 2,194.7
S_Khomani_San-2A + S_BantuKenya-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Piapoco-1B Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 11 83.7304 2,627.5
S_Khomani_San-2A + S_Finnish-3A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Mozabite-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Saami-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Dai-3B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_French-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Uygur-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_French-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Xibo-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Hungarian-2A Discordant SGDP 136,602,042 – 136,762,052 160,010.0 0.01668088 14 77.8048 3,598.7
S_Khomani_San-2B + S_Chukchi-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Iranian-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Mozabite-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Tuscan-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Kapu-1A Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 13 83.7304 3,105.2
S_Khomani_San-2A + S_Jordanian-3A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Burusho-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Kyrgyz-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Punjabi-4A Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 12 83.7304 2,866.3
S_Khomani_San-2A + S_Adygei-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Bulgarian-2A Discordant SGDP 136,563,445 – 136,711,848 148,403.0 0.02012122 10 72.2334 2,768.8
S_Khomani_San-2A + S_Spanish-1B Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 15 83.7304 3,582.9
S_Khomani_San-2B + S_English-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Spanish-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Estonian-2A Discordant SGDP 136,563,445 – 136,677,400 113,955.5 0.01928611 8 55.6986 2,872.6
S_Khomani_San-2A + S_Tajik-2A Discordant SGDP 136,619,416 – 136,735,800 116,384.0 0.01275843 8 56.8643 2,813.7
S_Khomani_San-2B + S_Estonian-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Yemenite_Jew-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Finnish-3A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Yemenite_Jew-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Basque-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Yemenite_Jew-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Icelandic-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + B_Crete-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Palestinian-1A Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 8 83.7304 1,910.9
S_Khomani_San-2A + B_Sardinian-3B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Norwegian-1A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Chane-1A Discordant SGDP 136,563,445 – 136,735,800 172,355.0 0.02036609 16 83.7304 3,821.8
S_Khomani_San-2B + S_Orcadian-2A Discordant SGDP 136,563,445 – 136,762,052 198,607.0 0.02158089 14 96.3314 2,906.6
S_Khomani_San-2A + S_Piapoco-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Lezgin-2B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2A + S_Pima-1A Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 14 77.9634 3,591.4
S_Khomani_San-2B + S_North_Ossetian-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Mongola-2A Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Turkish-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Tubalar-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
S_Khomani_San-2B + S_Saharawi-2A Discordant SGDP 136,563,445 – 136,678,814 115,369.5 0.01948962 10 56.3774 3,547.5
S_Khomani_San-2B + S_Even-2B Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 11 77.9634 2,821.8
S_Khomani_San-2B + S_Pima-1A Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 11 77.9634 2,821.8
S_Khomani_San-2B + S_Eskimo_Chaplin-1A Discordant SGDP 136,563,445 – 136,762,052 198,607.0 0.02158089 16 96.3314 3,321.9
S_Khomani_San-2B + S_Pima-2B Discordant SGDP 136,590,087 – 136,750,428 160,340.5 0.01697273 12 77.9634 3,078.4
S_Khomani_San-2B + S_Tlingit-1B Discordant SGDP 136,632,738 – 136,632,796 57.5 0.00001479 2 1.0276 38,925.7
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2026 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.