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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs1021486672
Alleles:
reference
G
ancestral
alternate
A
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Allele frequency in   SGDP
Sample 99.5%
0.5%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 94.4%
5.6%
EAS 100.0%
0.0%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Age estimation summary Joint clock
Data source Estimated age of A allele # pairs = concordant + discordant Quality score
 Genomes in SGDP320.1 generations 101  =  3  +  981.000
Pairwise results table Joint clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Even-3B + S_Eskimo_Sireniki-2A Concordant SGDP 30,669,06732,547,632 1,878,565.0 2.01603181 13 2,515.5366 103.4
S_Eskimo_Sireniki-1B + S_Eskimo_Sireniki-2A Concordant SGDP 28,650,66933,532,667 4,881,998.0 6.91215958 15 7,874.0867 38.1
S_Eskimo_Sireniki-1B + S_Even-3B Concordant SGDP 30,669,06732,547,632 1,878,565.0 2.01603181 14 2,515.5366 111.3
S_Eskimo_Sireniki-2A + S_Makrani-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-14A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-2B Discordant SGDP 31,112,96131,722,616 609,654.5 0.27831241 116 516.2841 4,493.7
S_Eskimo_Sireniki-2A + S_Adygei-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-1B + S_Dai-1B Discordant SGDP 31,545,84231,868,351 322,509.0 0.02405567 16 175.0489 1,828.1
S_Eskimo_Sireniki-2A + S_French-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Norwegian-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Dai-3A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Tujia-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-1B + S_Turkish-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Han-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-1B + S_Punjabi-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-1B + S_Khonda_Dora-1B Discordant SGDP 31,134,69531,722,616 587,920.5 0.24229292 113 477.0362 4,737.6
S_Eskimo_Sireniki-1B + S_Igorot-2B Discordant SGDP 31,545,84231,868,351 322,509.0 0.02405567 14 175.0489 1,599.6
S_Eskimo_Sireniki-2A + S_Abkhasian-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Yi-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Estonian-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Tujia-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Icelandic-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Japanese-3A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Russian-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + B_Australian-4B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + B_Papuan-15A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Dusun-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-4A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Bougainville-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-9A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Papuan-10A Discordant SGDP 31,112,96131,722,616 609,654.5 0.27831241 117 516.2841 4,532.4
S_Eskimo_Sireniki-2A + S_Mala-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Papuan-5A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Burusho-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Papuan-12A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_English-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Papuan-2B Discordant SGDP 31,112,96131,722,616 609,654.5 0.27831241 120 516.2841 4,648.6
S_Eskimo_Sireniki-2A + S_Finnish-3A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Bengali-2A Discordant SGDP 31,112,96131,722,616 609,654.5 0.27831241 119 516.2841 4,609.9
S_Eskimo_Sireniki-2A + S_Greek-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Bengali-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Kyrgyz-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Kapu-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Polish-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + B_Australian-4B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Lezgin-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-3B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Spanish-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-6A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Somali-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-1B + S_Mozabite-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Maori-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Khonda_Dora-1B Discordant SGDP 31,134,69531,722,616 587,920.5 0.24229292 115 477.0362 4,821.4
S_Eskimo_Sireniki-2A + S_Papuan-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Mala-3B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-5B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Bulgarian-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-4B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Atayal-1A Discordant SGDP 31,545,84231,841,841 295,999.0 0.02187699 18 160.5811 2,241.9
S_Eskimo_Sireniki-2A + S_Papuan-7A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Estonian-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Papuan-12A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Basque-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Mansi-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Georgian-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Mala-3A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Greek-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Kalash-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Palestinian-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Kalash-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Tuscan-1A Discordant SGDP 31,068,51531,722,616 654,101.0 0.33226902 135 580.7837 4,648.9
S_Eskimo_Sireniki-2A + S_English-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Tuscan-1B Discordant SGDP 31,068,51531,722,616 654,101.0 0.33226902 134 580.7837 4,614.5
S_Eskimo_Sireniki-2A + S_Estonian-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + S_Polish-1B Discordant SGDP 31,134,69531,722,616 587,920.5 0.24229292 115 477.0362 4,821.4
S_Eskimo_Sireniki-2A + S_Finnish-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Even-3B + B_Papuan-15B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Saami-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Mixe-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Georgian-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Mixtec-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Hungarian-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Zapotec-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Sardinian-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Tubalar-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Kyrgyz-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Tubalar-1A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Orcadian-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Even-3A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Russian-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Even-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Chechen-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Yakut-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_North_Ossetian-2A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Tlingit-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Spanish-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Yi-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Turkish-1B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + S_Korean-2B Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + B_Sardinian-3A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
S_Eskimo_Sireniki-2A + B_Australian-3A Discordant SGDP 31,722,46831,722,616 148.0 0.00000014 4 1.0712 74,685.9
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.