Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs1021486672
Alleles:
reference
Gancestral
alternate
Aderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome
Explore
10
position 31,722,525 (GRCh37)
Explore rs1021486672 on Ensembl!
Allele frequency in SGDP ⇪
| Sample | 99.5% |
0.5% |
|
AFR |
100.0% |
0.0% |
|
AMR |
100.0% |
0.0% |
|
CAS |
94.4% |
5.6% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
| reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
| Data source | Estimated age of A allele |
# pairs = concordant + discordant | Quality score |
|---|---|---|---|
| Genomes in SGDP | 320.1 generations | 101 = 3 + 98 | 1.000 |
Pairwise results table
| Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
|---|---|---|---|---|---|---|---|---|
| S_Even-3B + S_Eskimo_Sireniki-2A | Concordant | SGDP | 30,669,067 – 32,547,632 |
1,878,565.0 |
2.01603181 |
13 | 2,515.5366 | 103.4 |
| S_Eskimo_Sireniki-1B + S_Eskimo_Sireniki-2A | Concordant | SGDP | 28,650,669 – 33,532,667 |
4,881,998.0 |
6.91215958 |
15 | 7,874.0867 | 38.1 |
| S_Eskimo_Sireniki-1B + S_Even-3B | Concordant | SGDP | 30,669,067 – 32,547,632 |
1,878,565.0 |
2.01603181 |
14 | 2,515.5366 | 111.3 |
| S_Eskimo_Sireniki-2A + S_Makrani-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-14A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-2B | Discordant | SGDP | 31,112,961 – 31,722,616 |
609,654.5 |
0.27831241 |
116 | 516.2841 | 4,493.7 |
| S_Eskimo_Sireniki-2A + S_Adygei-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-1B + S_Dai-1B | Discordant | SGDP | 31,545,842 – 31,868,351 |
322,509.0 |
0.02405567 |
16 | 175.0489 | 1,828.1 |
| S_Eskimo_Sireniki-2A + S_French-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Norwegian-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Dai-3A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Tujia-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-1B + S_Turkish-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Han-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-1B + S_Punjabi-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-1B + S_Khonda_Dora-1B | Discordant | SGDP | 31,134,695 – 31,722,616 |
587,920.5 |
0.24229292 |
113 | 477.0362 | 4,737.6 |
| S_Eskimo_Sireniki-1B + S_Igorot-2B | Discordant | SGDP | 31,545,842 – 31,868,351 |
322,509.0 |
0.02405567 |
14 | 175.0489 | 1,599.6 |
| S_Eskimo_Sireniki-2A + S_Abkhasian-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Yi-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Estonian-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Tujia-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Icelandic-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Japanese-3A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Russian-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + B_Australian-4B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + B_Papuan-15A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Dusun-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-4A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Bougainville-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-9A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Papuan-10A | Discordant | SGDP | 31,112,961 – 31,722,616 |
609,654.5 |
0.27831241 |
117 | 516.2841 | 4,532.4 |
| S_Eskimo_Sireniki-2A + S_Mala-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Papuan-5A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Burusho-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Papuan-12A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_English-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Papuan-2B | Discordant | SGDP | 31,112,961 – 31,722,616 |
609,654.5 |
0.27831241 |
120 | 516.2841 | 4,648.6 |
| S_Eskimo_Sireniki-2A + S_Finnish-3A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Bengali-2A | Discordant | SGDP | 31,112,961 – 31,722,616 |
609,654.5 |
0.27831241 |
119 | 516.2841 | 4,609.9 |
| S_Eskimo_Sireniki-2A + S_Greek-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Bengali-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Kyrgyz-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Kapu-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Polish-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + B_Australian-4B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Lezgin-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-3B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Spanish-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-6A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Somali-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-1B + S_Mozabite-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Maori-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Khonda_Dora-1B | Discordant | SGDP | 31,134,695 – 31,722,616 |
587,920.5 |
0.24229292 |
115 | 477.0362 | 4,821.4 |
| S_Eskimo_Sireniki-2A + S_Papuan-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Mala-3B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-5B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Bulgarian-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-4B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Atayal-1A | Discordant | SGDP | 31,545,842 – 31,841,841 |
295,999.0 |
0.02187699 |
18 | 160.5811 | 2,241.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-7A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Estonian-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Papuan-12A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Basque-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Mansi-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Georgian-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Mala-3A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Greek-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Kalash-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Palestinian-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Kalash-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Tuscan-1A | Discordant | SGDP | 31,068,515 – 31,722,616 |
654,101.0 |
0.33226902 |
135 | 580.7837 | 4,648.9 |
| S_Eskimo_Sireniki-2A + S_English-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Tuscan-1B | Discordant | SGDP | 31,068,515 – 31,722,616 |
654,101.0 |
0.33226902 |
134 | 580.7837 | 4,614.5 |
| S_Eskimo_Sireniki-2A + S_Estonian-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + S_Polish-1B | Discordant | SGDP | 31,134,695 – 31,722,616 |
587,920.5 |
0.24229292 |
115 | 477.0362 | 4,821.4 |
| S_Eskimo_Sireniki-2A + S_Finnish-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Even-3B + B_Papuan-15B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Saami-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Mixe-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Georgian-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Mixtec-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Hungarian-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Zapotec-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Sardinian-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Tubalar-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Kyrgyz-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Tubalar-1A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Orcadian-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Even-3A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Russian-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Even-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Chechen-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Yakut-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_North_Ossetian-2A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Tlingit-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Spanish-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Yi-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Turkish-1B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + S_Korean-2B | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + B_Sardinian-3A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
| S_Eskimo_Sireniki-2A + B_Australian-3A | Discordant | SGDP | 31,722,468 – 31,722,616 |
148.0 |
0.00000014 |
4 | 1.0712 | 74,685.9 |
Data shown in this table can be downloaded from this page.
| α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
|---|
Patrick K. Albers