Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs540289005
Alleles:
reference
Cancestral
alternate
Tderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome
Explore
10
position 31,705,165 (GRCh37)
Explore rs540289005 on Ensembl!
Allele frequency in SGDP ⇪
| Sample | 98.4% |
1.6% |
|
AFR |
89.8% |
10.2% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
| reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
| Data source | Estimated age of T allele |
# pairs = concordant + discordant | Quality score |
|---|---|---|---|
| Genomes in SGDP | 12,011.6 generations | 123 = 28 + 95 | 1.000 |
Pairwise results table
| Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
|---|---|---|---|---|---|---|---|---|
| S_Ju_hoan_North-2B + S_Khomani_San-2A | Concordant | SGDP | 31,557,667 – 31,824,938 |
267,270.5 |
0.01140339 |
70 | 138.4125 | 10,114.7 |
| S_Khomani_San-2A + S_Khomani_San-1B | Concordant | SGDP | 30,998,177 – 31,824,938 |
826,760.5 |
0.47080762 |
52 | 774.4911 | 1,342.8 |
| S_Ju_hoan_North-2B + S_Ju_hoan_North-1B | Concordant | SGDP | 31,556,603 – 31,870,414 |
313,810.5 |
0.04203703 |
20 | 185.2587 | 2,159.1 |
| S_Ju_hoan_North-1B + S_Ju_hoan_North-3B | Concordant | SGDP | 31,557,667 – 31,951,947 |
394,280.0 |
0.25042696 |
60 | 390.5960 | 3,072.2 |
| S_Ju_hoan_North-1B + S_Khomani_San-2A | Concordant | SGDP | 31,557,667 – 31,824,938 |
267,270.5 |
0.01140339 |
56 | 138.4125 | 8,091.8 |
| S_Ju_hoan_North-1A + S_Ju_hoan_North-3B | Concordant | SGDP | 31,480,954 – 31,910,782 |
429,827.5 |
0.25894213 |
11 | 414.4709 | 530.8 |
| S_Ju_hoan_North-1A + B_Ju_hoan_North-4B | Concordant | SGDP | 31,557,667 – 31,841,841 |
284,174.0 |
0.01321669 |
36 | 147.9769 | 4,865.6 |
| S_Ju_hoan_North-2A + S_Ju_hoan_North-1A | Concordant | SGDP | 31,557,667 – 31,906,050 |
348,382.5 |
0.13191199 |
50 | 273.7532 | 3,652.9 |
| S_Ju_hoan_North-2A + S_Ju_hoan_North-1B | Concordant | SGDP | 31,068,515 – 33,707,610 |
2,639,095.5 |
1.74323778 |
137 | 2,662.3561 | 1,029.2 |
| S_Ju_hoan_North-2A + S_Ju_hoan_North-3A | Concordant | SGDP | 31,557,667 – 31,841,841 |
284,174.0 |
0.01321669 |
33 | 147.9769 | 4,460.2 |
| S_Ju_hoan_North-2A + S_Ju_hoan_North-3B | Concordant | SGDP | 31,557,667 – 31,906,050 |
348,382.5 |
0.13191199 |
48 | 273.7532 | 3,506.8 |
| S_Ju_hoan_North-3B + S_Khomani_San-1B | Concordant | SGDP | 31,480,954 – 31,910,782 |
429,827.5 |
0.25894213 |
15 | 414.4709 | 723.8 |
| S_Ju_hoan_North-3B + S_Khomani_San-2A | Concordant | SGDP | 31,480,954 – 31,824,938 |
343,983.5 |
0.04086920 |
38 | 198.8074 | 3,822.8 |
| S_Ju_hoan_North-3B + B_Ju_hoan_North-4B | Concordant | SGDP | 31,557,667 – 31,841,841 |
284,174.0 |
0.01321669 |
33 | 147.9769 | 4,460.2 |
| S_Ju_hoan_North-2B + S_Khomani_San-1B | Concordant | SGDP | 31,557,667 – 31,840,315 |
282,647.5 |
0.01290321 |
50 | 146.9934 | 6,803.0 |
| S_Ju_hoan_North-2A + B_Ju_hoan_North-4B | Concordant | SGDP | 31,054,926 – 31,870,414 |
815,488.0 |
0.38557722 |
33 | 700.8960 | 941.7 |
| S_Ju_hoan_North-1A + S_Ju_hoan_North-3A | Concordant | SGDP | 31,444,035 – 31,870,414 |
426,379.0 |
0.16908465 |
20 | 340.9296 | 1,173.3 |
| S_Ju_hoan_North-2A + S_Khomani_San-2A | Concordant | SGDP | 31,557,667 – 31,795,978 |
238,310.5 |
0.01002565 |
43 | 123.4096 | 6,968.7 |
| S_Ju_hoan_North-1A + S_Ju_hoan_North-1B | Concordant | SGDP | 31,557,667 – 31,906,050 |
348,382.5 |
0.13191199 |
52 | 273.7532 | 3,799.0 |
| S_Ju_hoan_North-2B + S_Ju_hoan_North-3A | Concordant | SGDP | 31,557,667 – 31,840,315 |
282,647.5 |
0.01290321 |
49 | 146.9934 | 6,667.0 |
| S_Ju_hoan_North-1A + S_Khomani_San-1B | Concordant | SGDP | 31,107,575 – 32,162,772 |
1,055,197.0 |
0.71285433 |
68 | 1,077.7780 | 1,261.9 |
| S_Ju_hoan_North-2B + S_Ju_hoan_North-3B | Concordant | SGDP | 31,557,667 – 31,840,315 |
282,647.5 |
0.01290321 |
45 | 146.9934 | 6,122.7 |
| S_Ju_hoan_North-1B + B_Ju_hoan_North-4B | Concordant | SGDP | 31,068,515 – 31,870,414 |
801,899.0 |
0.36691039 |
36 | 679.4398 | 1,059.7 |
| S_Ju_hoan_North-2B + S_Ju_hoan_North-1A | Concordant | SGDP | 31,557,667 – 31,840,315 |
282,647.5 |
0.01290321 |
48 | 146.9934 | 6,530.9 |
| S_Khomani_San-2A + B_Ju_hoan_North-4B | Concordant | SGDP | 31,557,667 – 31,824,938 |
267,270.5 |
0.01140339 |
59 | 138.4125 | 8,525.2 |
| S_Khomani_San-1B + B_Ju_hoan_North-4B | Concordant | SGDP | 31,557,667 – 31,841,841 |
284,174.0 |
0.01321669 |
38 | 147.9769 | 5,135.9 |
| S_Ju_hoan_North-3A + S_Ju_hoan_North-3B | Concordant | SGDP | 31,408,348 – 31,870,414 |
462,066.0 |
0.19978861 |
30 | 382.6226 | 1,568.1 |
| S_Ju_hoan_North-3A + B_Ju_hoan_North-4B | Concordant | SGDP | 31,557,667 – 31,841,841 |
284,174.0 |
0.01321669 |
37 | 147.9769 | 5,000.8 |
| S_Khomani_San-2A + S_Relli-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Yemenite_Jew-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_BedouinB-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Basque-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Bulgarian-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Kalash-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Madiga-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Tu-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Naxi-3B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Aleut-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Even-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Tubalar-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Pima-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Yadava-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Oroqen-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Mala-3A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_She-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Pathan-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Burmese-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Abkhasian-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Thai-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Saami-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Dusun-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Druze-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Chukchi-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Tuscan-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Orcadian-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Turkish-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + B_Australian-4A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + B_French-3A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Papuan-4B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-1B + S_Papuan-5B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Papuan-7A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Tubalar-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Papuan-12A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Even-3B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Brahmin-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Yakut-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Georgian-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Cambodian-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Icelandic-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Han-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Kyrgyz-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Daur-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Russian-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_She-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Spanish-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Korean-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3A + S_Turkish-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Ami-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Mozabite-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + B_Australian-3B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Maori-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Bougainville-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Papuan-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Kapu-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Papuan-7A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Irula-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Mansi-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Mala-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Khonda_Dora-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Brahmin-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Brahui-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Makrani-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Kalash-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Balochi-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Burusho-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Sindhi-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Finnish-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Armenian-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Iranian-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_English-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + S_Chechen-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Saami-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-3B + B_Sardinian-3B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Iranian-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-2A + S_Lezgin-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Druze-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-1A + S_Papuan-4A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Sardinian-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-1A + S_Papuan-9B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Jordanian-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-1A + S_Sardinian-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Tajik-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-1A + S_Polish-1A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Yemenite_Jew-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-1B + S_Papuan-14A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + B_Dai-4B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Ju_hoan_North-1B + S_Papuan-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + B_Papuan-15A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Mixe-2A | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-1B + S_Papuan-3B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Mongola-1B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-1B + S_French-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
| S_Khomani_San-2A + S_Mongola-2B | Discordant | SGDP | 31,705,159 – 31,705,229 |
69.5 |
0.00000016 |
4 | 1.0335 | 77,407.5 |
Data shown in this table can be downloaded from this page.
| α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
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Patrick K. Albers