HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs563746196
Alleles:
reference
A
ancestral
alternate
G
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 10   position  31,663,150  (GRCh37) Explore rs563746196 on Ensembl!
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 98.1%
1.9%
EAS 98.9%
1.1%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Mutation clock
Data source Estimated age of G allele # pairs = concordant + discordant Quality score
    Genomes in SGDP581.8 generations 98  =  1  +  971.000
Pairwise results table Mutation clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Yakut-2B + S_Tu-1B Concordant SGDP 31,481,698 – 32,370,205 888,507.5 0.48068284 11 427.4836 514.6
S_Yakut-2B + S_Czech-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Punjabi-4B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Kusunda-1A Discordant SGDP 31,663,142 – 31,697,077 33,934.5 0.00101330 3 17.2886 3,470.5
S_Tu-1B + S_Madiga-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Pima-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Lezgin-2A Discordant SGDP 31,296,226 – 31,663,157 366,931.0 0.21283276 43 177.1269 4,855.3
S_Yakut-2B + S_Palestinian-3B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Even-3B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Ulchi-1B Discordant SGDP 31,548,099 – 31,981,099 433,000.0 0.26903236 20 208.8400 1,915.3
S_Yakut-2B + S_Ulchi-1A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 11 185.2250 1,187.7
S_Yakut-2B + S_Ulchi-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Tubalar-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Altaian-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Mongola-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Finnish-2B Discordant SGDP 31,565,428 – 31,727,319 161,891.0 0.00557631 9 78.7077 2,286.9
S_Yakut-2B + S_Greek-1A Discordant SGDP 31,565,428 – 31,841,841 276,413.0 0.01149221 11 133.6782 1,645.7
S_Yakut-2B + S_Even-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Jordanian-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Yakut-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + B_Dai-4A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 14 185.2250 1,511.7
S_Yakut-2B + S_Even-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Tu-1B + S_Han-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Naxi-3B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Brahmin-1A Discordant SGDP 31,663,142 – 31,868,351 205,209.0 0.00958860 8 99.5003 1,608.0
S_Yakut-2B + S_Miao-1A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 11 185.2250 1,187.7
S_Yakut-2B + S_Burusho-1B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 14 185.2250 1,511.7
S_Yakut-2B + S_Miao-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Albanian-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Tu-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Estonian-2B Discordant SGDP 31,484,549 – 31,795,978 311,428.5 0.02702374 11 150.4857 1,461.9
S_Yakut-2B + S_Oroqen-2A Discordant SGDP 31,663,142 – 31,868,351 205,209.0 0.00958860 11 99.5003 2,211.0
S_Yakut-2B + S_French-1A Discordant SGDP 31,135,093 – 31,663,157 528,063.5 0.23800322 70 254.4705 5,501.6
S_Yakut-2B + S_Uygur-1A Discordant SGDP 31,620,012 – 31,868,351 248,339.5 0.01078264 11 120.2030 1,830.2
S_Yakut-2B + S_Iraqi_Jew-1A Discordant SGDP 31,601,307 – 31,795,978 194,671.0 0.00595989 12 94.4421 2,541.2
S_Yakut-2B + S_Uygur-1B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 11 185.2250 1,187.7
S_Yakut-2B + S_Sardinian-1B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Yi-2B Discordant SGDP 31,548,099 – 31,868,351 320,252.0 0.01981494 10 154.7210 1,292.6
S_Yakut-2B + S_Orcadian-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Dai-2B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 9 146.4030 1,229.5
S_Yakut-2B + S_Spanish-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Uygur-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + B_Papuan-15A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 15 146.4030 2,049.1
S_Yakut-2B + S_Korean-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Tu-1B + S_Yakut-1B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Korean-1B Discordant SGDP 31,663,142 – 31,868,351 205,209.0 0.00958860 13 99.5003 2,613.1
S_Tu-1B + S_She-2B Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 68 353.1549 3,851.0
S_Yakut-2B + S_Burmese-1B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 13 185.2250 1,403.7
S_Yakut-2B + S_Mozabite-1B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Thai-1B Discordant SGDP 31,134,695 – 31,663,157 528,461.5 0.24094651 53 254.6615 4,162.4
S_Yakut-2B + S_Madiga-2B Discordant SGDP 31,663,142 – 31,697,077 33,934.5 0.00101330 3 17.2886 3,470.5
S_Yakut-2B + S_Thai-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Brahui-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Kinh-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Kalash-1A Discordant SGDP 31,663,142 – 31,697,077 33,934.5 0.00101330 3 17.2886 3,470.5
S_Yakut-2B + S_Kinh-1A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 10 185.2250 1,079.8
S_Yakut-2B + S_Abkhasian-1B Discordant SGDP 31,663,142 – 31,841,841 178,699.0 0.00740992 7 86.7755 1,613.4
S_Yakut-2B + B_Australian-3B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 16 185.2250 1,727.6
S_Yakut-2B + S_Bulgarian-1B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + B_Australian-4B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_English-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Maori-1B Discordant SGDP 31,663,142 – 31,697,077 33,934.5 0.00101330 3 17.2886 3,470.5
S_Yakut-2B + S_Estonian-1B Discordant SGDP 31,663,142 – 31,868,351 205,209.0 0.00958860 7 99.5003 1,407.0
S_Yakut-2B + S_Bougainville-2B Discordant SGDP 31,663,142 – 31,697,077 33,934.5 0.00101330 3 17.2886 3,470.5
S_Yakut-2B + S_Finnish-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-3A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 15 146.4030 2,049.1
S_Yakut-2B + S_French-2B Discordant SGDP 31,548,099 – 31,795,978 247,878.5 0.01444522 11 119.9817 1,833.6
S_Yakut-2B + S_Papuan-3B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Hungarian-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-1B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Druze-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-5A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 18 146.4030 2,459.0
S_Yakut-2B + S_Bergamo-2B Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 65 353.1549 3,681.1
S_Yakut-2B + S_Papuan-4A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Tuscan-2B Discordant SGDP 31,134,695 – 31,663,157 528,461.5 0.24094651 50 254.6615 3,926.8
S_Yakut-2B + S_Papuan-4B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Kyrgyz-1B Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 12 129.1814 1,857.9
S_Yakut-2B + S_Papuan-14B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 15 146.4030 2,049.1
S_Yakut-2B + S_Polish-1B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-7B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Adygei-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-9A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Turkish-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-9B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + B_French-3B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-12B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Karitiana-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Papuan-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Tu-1B + S_Tubalar-2A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Chukchi-1A Discordant SGDP 31,663,142 – 31,697,077 33,934.5 0.00101330 3 17.2886 3,470.5
S_Tu-1B + S_Even-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Mansi-2B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Tu-1B + S_Oroqen-2A Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 73 353.1549 4,134.2
S_Yakut-2B + S_Kapu-1A Discordant SGDP 31,663,142 – 32,451,906 788,763.5 0.48737286 53 379.6065 2,792.4
S_Tu-1B + S_Dusun-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Irula-1B Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Tu-1B + S_Saami-1A Discordant SGDP 31,663,142 – 31,663,157 14.5 0.00000005 2 1.0070 39,723.5
S_Yakut-2B + S_Mala-3A Discordant SGDP 31,548,099 – 31,841,841 293,742.0 0.01763626 10 141.9962 1,408.5
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2026 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.