HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

Unmatched Variant ID, using internal ID instead:
X436579517
Alleles:
reference
T
–
alternate
C
–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome 2   position  136,579,517  (GRCh37)
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 97.7%
2.3%
CAS 100.0%
0.0%
EAS 98.9%
1.1%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Joint clock
Data source Estimated age of C allele # pairs = concordant + discordant Quality score
    Genomes in SGDP271.9 generations 98  =  1  +  971.000
Pairwise results table Joint clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Quechua-1B + S_Tujia-2B Concordant SGDP 135,757,046 – 136,600,964 843,918.5 0.11260757 8 496.1669 322.5
S_Quechua-1B + S_Adygei-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Orcadian-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Tuscan-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + B_Han-3A Discordant SGDP 135,760,098 – 136,821,414 1,061,316.0 0.17130701 23 647.4773 710.4
S_Tujia-2B + S_Yi-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Ulchi-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Pima-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Cambodian-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Aleut-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Tlingit-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Tubalar-1B Discordant SGDP 136,494,791 – 136,600,964 106,173.0 0.01659883 9 65.2421 2,759.0
S_Quechua-1B + S_Mongola-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Mongola-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Mixtec-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Yemenite_Jew-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + B_Sardinian-3A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Cambodian-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Quechua-3A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Naxi-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Naxi-3A Discordant SGDP 135,477,509 – 136,821,414 1,343,904.5 0.42555128 22 986.5152 446.0
S_Quechua-1B + S_Dai-3B Discordant SGDP 135,760,098 – 136,579,614 819,516.0 0.06749760 30 448.3658 1,338.2
S_Tujia-2B + S_Burmese-2B Discordant SGDP 135,726,038 – 136,821,414 1,095,375.5 0.30881408 20 773.8315 516.9
S_Quechua-1B + S_Miao-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Iranian-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Uygur-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Kyrgyz-2B Discordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 20 461.9390 865.9
S_Quechua-1B + S_Xibo-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Lezgin-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Yi-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Spanish-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Mozabite-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + B_Crete-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Dai-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Piapoco-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Xibo-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Mayan-1A Discordant SGDP 135,760,098 – 136,762,052 1,001,954.0 0.08851659 9 552.7512 325.6
S_Quechua-1B + S_Thai-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Yakut-1A Discordant SGDP 136,034,197 – 136,821,414 787,217.0 0.15402219 14 502.0819 557.7
S_Quechua-1B + S_Kinh-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Mansi-1B Discordant SGDP 135,726,038 – 136,643,760 917,722.0 0.21772890 12 615.6897 389.8
S_Quechua-1B + S_Dusun-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Daur-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Chukchi-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Korean-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Mansi-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Dusun-2A Discordant SGDP 135,597,516 – 136,821,414 1,223,898.0 0.32984843 22 852.3498 516.2
S_Quechua-1B + S_Brahmin-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Mozabite-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Burusho-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Samaritan-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Sindhi-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Jordanian-3A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Punjabi-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Norwegian-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Punjabi-4B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Orcadian-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Bulgarian-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_North_Ossetian-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Atayal-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Adygei-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Czech-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Turkish-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_English-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Yemenite_Jew-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_English-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + B_French-3B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_English-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Saharawi-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Estonian-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Piapoco-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Estonian-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Pima-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Finnish-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Mixe-3A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Finnish-3A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Mongola-1B Discordant SGDP 135,760,098 – 136,785,841 1,025,743.0 0.10319507 20 575.9127 694.5
S_Quechua-1B + S_Finnish-3B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Tubalar-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_BantuKenya-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Tlingit-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Saami-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Lahu-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Saami-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Miao-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_French-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Uygur-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Basque-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_She-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Basque-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Korean-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Georgian-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Kinh-2B Discordant SGDP 135,760,098 – 136,785,841 1,025,743.0 0.10319507 34 575.9127 1,180.7
S_Quechua-1B + S_Greek-2B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + S_Kyrgyz-2A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Quechua-1B + S_Icelandic-1A Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
S_Tujia-2B + B_Mixe-1B Discordant SGDP 135,760,098 – 136,579,614 819,516.0 0.06749760 32 448.3658 1,427.4
S_Quechua-1B + S_Icelandic-1B Discordant SGDP 136,579,496 – 136,579,614 118.0 0.00000406 4 1.0599 75,479.7
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2025 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.