HumanGenomeDating
Atlas of Variant Age
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Examples: LCT, MCM6, EDAR, ZEB1
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TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
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SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

Unmatched Variant ID, using internal ID instead:
X436590795
Alleles:
reference
C
–
alternate
T
–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome 2   position  136,590,795  (GRCh37)
Allele frequency in   SGDP ⇪
Sample 94.8%
5.2%
AFR 100.0%
0.0%
AMR 93.2%
6.8%
CAS 87.0%
13.0%
EAS 90.4%
9.6%
OCN 82.0%
18.0%
SAS 98.7%
1.3%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Recombination clock
Data source Estimated age of T allele # pairs = concordant + discordant Quality score
    Genomes in SGDP1,872.5 generations 194  =  99  +  950.621
Pairwise results table Recombination clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Tujia-2B + S_Papuan-12A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Lahu-1B + S_Kinh-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Naxi-3A + S_Papuan-14A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Papuan-14A + S_Igorot-2B Concordant SGDP 136,588,252 – 136,597,375 9,122.5 0.00119254 3 1.9540 30,705.8
S_Igorot-2B + S_Kyrgyz-2B Concordant SGDP 136,588,252 – 136,787,291 199,038.5 0.04669226 3 38.3538 1,564.4
S_Korean-1B + S_Papuan-14A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Kinh-2B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,787,291 198,053.0 0.04636881 3 38.0951 1,575.0
S_Quechua-1B + S_Ulchi-1B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_Quechua-1B + S_Tlingit-2A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_Quechua-3B + S_Igorot-2B Concordant SGDP 136,588,252 – 136,597,375 9,122.5 0.00119254 3 1.9540 30,705.8
S_Quechua-3B + B_Han-3A Concordant SGDP 135,760,098 – 136,646,325 886,227.0 0.08073192 3 65.5855 914.8
S_Quechua-3B + S_Papuan-12A Concordant SGDP 136,389,477 – 136,646,325 256,848.0 0.04784810 3 39.2785 1,527.6
S_Quechua-3B + S_Burmese-2B Concordant SGDP 135,726,038 – 136,646,325 920,286.5 0.21823898 3 175.5912 341.7
S_Quechua-3B + S_Uygur-1B Concordant SGDP 135,760,098 – 136,646,325 886,227.0 0.08073192 3 65.5855 914.8
S_Uygur-1B + S_Igorot-2A Concordant SGDP 136,588,252 – 136,787,770 199,517.5 0.05375054 3 44.0004 1,363.6
S_Quechua-1B + S_Lahu-1B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_She-2A + S_Papuan-3B Concordant SGDP 136,389,477 – 136,776,289 386,812.0 0.06171828 3 50.3746 1,191.1
S_Quechua-1B + S_Naxi-3A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_Burmese-2B + S_Igorot-2B Concordant SGDP 136,588,252 – 136,822,937 234,684.5 0.10811666 3 87.4933 685.8
S_Quechua-1B + S_Tujia-2B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_Papuan-3B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 3 1.6953 35,392.6
S_Quechua-1B + S_Dusun-2A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_Papuan-12A + S_Igorot-2A Concordant SGDP 136,589,238 – 136,590,876 1,638.5 0.00048002 3 1.3840 43,352.1
S_Quechua-1B + S_Papuan-3B Concordant SGDP 136,389,477 – 136,600,964 211,487.5 0.03876999 3 32.0160 1,874.1
S_Mansi-1B + B_Han-3A Concordant SGDP 135,760,098 – 136,652,411 892,313.0 0.08411229 3 68.2898 878.6
S_Quechua-1B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,594,085 4,847.0 0.00066792 3 1.5343 39,104.8
S_Naxi-3A + S_She-2A Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Mongola-1B + S_Naxi-3A Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Tujia-2B + S_Uygur-1B Concordant SGDP 135,760,098 – 136,787,770 1,027,672.0 0.12363655 3 99.9092 600.5
S_Mongola-1B + S_Uygur-1B Concordant SGDP 135,344,431 – 136,787,291 1,442,860.0 0.40225893 3 322.8071 185.9
S_Tujia-2B + S_Igorot-2B Concordant SGDP 136,588,860 – 136,821,414 232,553.5 0.10122145 3 81.9772 731.9
S_Mongola-1B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Uygur-1B + B_Han-3A Concordant SGDP 135,760,098 – 136,787,770 1,027,672.0 0.12363655 3 99.9092 600.5
S_Mongola-1B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,787,291 198,053.0 0.04636881 3 38.0951 1,575.0
S_She-2A + S_Igorot-2B Concordant SGDP 136,588,252 – 136,787,291 199,038.5 0.04669226 3 38.3538 1,564.4
S_Mongola-1B + S_Pathan-2B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Burmese-2B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Yakut-1A + S_She-2A Concordant SGDP 136,040,901 – 136,787,291 746,390.0 0.09919023 3 80.3522 746.7
S_Kinh-2B + S_Papuan-1B Concordant SGDP 136,389,477 – 137,040,522 651,045.0 0.42544001 3 341.3520 175.8
S_Yakut-1A + S_Igorot-1A Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 3 87.2346 687.8
S_Dusun-2A + B_Han-3A Concordant SGDP 135,760,098 – 136,822,937 1,062,839.0 0.17800268 3 143.4021 418.4
S_Yakut-1A + S_Igorot-2A Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 3 87.2346 687.8
S_Papuan-14A + S_Papuan-12A Concordant SGDP 135,724,579 – 136,976,448 1,251,869.0 0.46982375 3 376.8590 159.2
S_Yakut-1A + S_Kyrgyz-2B Concordant SGDP 136,034,197 – 136,787,291 753,094.0 0.09929345 3 80.4348 745.9
S_Papuan-7A + S_Pathan-2B Concordant SGDP 135,487,023 – 136,785,841 1,298,817.5 0.35520286 3 285.1623 210.4
S_Yakut-1A + B_Han-3A Concordant SGDP 136,050,272 – 136,822,937 772,665.0 0.16049637 3 129.3971 463.7
S_Igorot-1A + S_Pathan-2B Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 3 1.6953 35,392.6
S_Tubalar-1B + S_Ulchi-1B Concordant SGDP 136,494,791 – 136,765,325 270,533.5 0.03588847 3 29.7108 2,019.5
S_Mayan-1A + B_Han-3A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_Tubalar-1B + S_Tlingit-2A Concordant SGDP 136,494,791 – 136,822,937 328,145.5 0.12294771 3 99.3582 603.9
S_Lahu-1B + S_She-2A Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Tubalar-1B + S_Lahu-1B Concordant SGDP 136,494,791 – 136,782,063 287,272.0 0.04343793 3 35.7503 1,678.3
S_Lahu-1B + S_Igorot-2B Concordant SGDP 136,588,252 – 136,787,770 199,517.5 0.05375054 3 44.0004 1,363.6
S_Tubalar-1B + S_Tujia-2B Concordant SGDP 136,494,791 – 136,821,414 326,622.5 0.11625204 3 94.0016 638.3
S_Naxi-3A + S_Kinh-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Tubalar-1B + S_Burmese-2B Concordant SGDP 136,494,791 – 136,822,937 328,145.5 0.12294771 3 99.3582 603.9
S_Naxi-3A + S_Papuan-12A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Tubalar-1B + S_Papuan-12A Concordant SGDP 136,495,139 – 136,781,557 286,418.5 0.04305691 3 35.4455 1,692.7
S_Tujia-2B + S_Dusun-2A Concordant SGDP 135,597,516 – 136,821,414 1,223,898.0 0.32984843 3 264.8787 226.5
S_Tubalar-1B + B_Han-3A Concordant SGDP 136,494,791 – 136,822,937 328,145.5 0.12294771 3 99.3582 603.9
S_Tujia-2B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,821,414 232,176.0 0.10109755 3 81.8780 732.8
S_Ulchi-1B + S_Mansi-1B Concordant SGDP 135,344,431 – 136,652,411 1,307,980.0 0.36979294 3 296.8344 202.1
S_Uygur-1B + S_Papuan-12A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Ulchi-1B + S_Lahu-1B Concordant SGDP 135,760,098 – 136,765,325 1,005,227.0 0.09094344 3 73.7548 813.5
S_Uygur-1B + S_Igorot-2B Concordant SGDP 136,589,238 – 136,787,770 198,532.0 0.05342709 3 43.7417 1,371.7
S_Ulchi-1B + S_She-2A Concordant SGDP 135,760,098 – 136,765,325 1,005,227.0 0.09094344 3 73.7548 813.5
S_She-2A + S_Burmese-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Ulchi-1B + S_Burmese-2B Concordant SGDP 135,344,431 – 136,765,325 1,420,894.0 0.37662410 3 302.2993 198.5
S_She-2A + S_Igorot-2A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 3 1.6953 35,392.6
S_Ulchi-1B + S_Papuan-7A Concordant SGDP 136,389,477 – 136,765,325 375,848.0 0.05805962 3 47.4477 1,264.6
S_Korean-1B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Ulchi-1B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 3 1.6953 35,392.6
S_Burmese-2B + S_Kinh-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Tlingit-2A + S_Korean-1B Concordant SGDP 136,032,499 – 137,041,418 1,008,918.5 0.45306680 3 363.4534 165.1
S_Burmese-2B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 3 87.2346 687.8
S_Tlingit-2A + S_Igorot-2B Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 3 87.2346 687.8
S_Kinh-2B + S_Papuan-3B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Tlingit-2A + S_Pathan-2B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 3 53.2454 1,126.9
S_Kinh-2B + S_Papuan-7A Concordant SGDP 136,389,477 – 137,040,522 651,045.0 0.42544001 3 341.3520 175.8
S_Mansi-1B + S_Lahu-1B Concordant SGDP 135,034,928 – 136,652,411 1,617,482.5 0.88096895 3 705.7752 85.0
S_Kinh-2B + S_Kyrgyz-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 3 94.2626 636.5
S_Mansi-1B + S_Korean-1B Concordant SGDP 136,034,197 – 136,652,411 618,214.0 0.06682746 3 54.4620 1,101.7
S_Papuan-3B + S_Papuan-12A Concordant SGDP 135,768,194 – 136,785,841 1,017,646.5 0.09641744 3 78.1340 767.9
S_Mansi-1B + S_Burmese-2B Concordant SGDP 135,340,792 – 136,652,411 1,311,618.5 0.37587806 3 301.7024 198.9
S_Papuan-1B + S_Papuan-12A Concordant SGDP 135,760,098 – 136,976,448 1,216,350.0 0.32693006 3 262.5440 228.5
S_Mansi-1B + S_Dusun-2A Concordant SGDP 135,726,038 – 136,652,411 926,372.5 0.22161935 3 178.2955 336.5
S_Papuan-14A + S_Igorot-1A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 3 1.6953 35,392.6
S_Mansi-1B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,643,760 254,283.5 0.04733802 3 38.8704 1,543.6
S_Papuan-14A + S_Pathan-2B Concordant SGDP 135,760,098 – 136,785,841 1,025,743.0 0.10319507 3 83.5561 718.1
S_Mansi-1B + S_Papuan-14A Concordant SGDP 136,389,477 – 136,643,760 254,283.5 0.04733802 3 38.8704 1,543.6
S_Papuan-12A + S_Igorot-1A Concordant SGDP 136,589,238 – 136,590,876 1,638.5 0.00048002 3 1.3840 43,352.1
S_Mansi-1B + S_Papuan-7A Concordant SGDP 136,389,477 – 136,643,760 254,283.5 0.04733802 3 38.8704 1,543.6
S_Igorot-1A + S_Igorot-2A Concordant SGDP 135,340,792 – 137,900,683 2,559,891.0 1.57700306 3 1,262.6025 47.5
S_Mansi-1B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 3 1.6953 35,392.6
S_Igorot-2B + S_Pathan-2B Concordant SGDP 136,588,252 – 136,597,375 9,122.5 0.00119254 3 1.9540 30,705.8
S_Mansi-1B + S_Pathan-2B Concordant SGDP 136,389,477 – 136,652,411 262,934.0 0.05122847 3 41.9828 1,429.2
S_Quechua-3B + S_Lahu-1B Concordant SGDP 135,760,098 – 136,646,325 886,227.0 0.08073192 3 65.5855 914.8
S_Mayan-1A + S_Quechua-3B Concordant SGDP 135,597,516 – 136,600,964 1,003,448.5 0.23019522 3 185.1562 324.1
S_Quechua-3B + S_Quechua-1B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 3 58.3230 1,028.8
S_Igorot-2A + S_Irula-2B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Igorot-2B + S_Mixtec-1B Discordant SGDP 135,477,509 – 136,590,876 1,113,367.0 0.32493375 3 260.9470 229.9
S_Quechua-3B + S_Korean-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2A + S_Han-2B Discordant SGDP 135,597,516 – 136,590,876 993,360.5 0.22923090 3 184.3847 325.4
S_Mayan-1A + S_English-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Mayan-1A + S_Spanish-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Xibo-1B Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 3 15.2658 3,930.4
S_Mayan-1A + S_Maori-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Aleut-2B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Quechua-1B + S_Miao-2A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Quechua-1B + S_Tlingit-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Quechua-1B + S_Mongola-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 3 15.2658 3,930.4
S_Quechua-3B + S_Itelman-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2B + S_Bougainville-2A Discordant SGDP 135,760,098 – 136,774,712 1,014,614.0 0.09342975 3 75.7438 792.1
S_Quechua-1B + S_Yi-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2B + S_Palestinian-1A Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Quechua-1B + S_Xibo-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 3 15.2658 3,930.4
S_Mayan-1A + S_Makrani-2A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Kinh-2A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Mayan-1A + S_Orcadian-1B Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Chukchi-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Mayan-1A + B_French-3B Discordant SGDP 136,590,788 – 136,822,338 231,550.0 0.10311222 3 83.4898 718.7
S_Quechua-1B + S_Brahmin-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-1A + S_Chane-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_Punjabi-2B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-2A + S_She-1B Discordant SGDP 135,597,516 – 136,822,338 1,224,822.5 0.33233796 3 266.8704 224.8
S_Quechua-1B + S_Bulgarian-1A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 3 15.2658 3,930.4
S_Igorot-2A + S_Makrani-2B Discordant SGDP 136,114,914 – 136,590,876 475,962.0 0.04952598 3 40.6208 1,477.1
S_Quechua-1B + S_Atayal-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-2B + S_Hezhen-2B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Quechua-1B + S_English-1B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-2B + S_Relli-1B Discordant SGDP 135,760,098 – 136,785,841 1,025,743.0 0.10319507 3 83.5561 718.1
S_Quechua-1B + S_English-2A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Mayan-1A + S_Mixe-3A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Estonian-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Brahui-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Estonian-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Mayan-1A + S_Hazara-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_Finnish-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Greek-2B Discordant SGDP 136,590,788 – 136,822,338 231,550.0 0.10311222 3 83.4898 718.7
S_Quechua-1B + S_Finnish-3B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Mayan-1A + S_Lezgin-2B Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Saami-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Tajik-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_French-2B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Mayan-1A + S_Surui-2A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Quechua-1B + S_Basque-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-1A + S_Punjabi-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_Basque-1B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-2A + S_Ulchi-2B Discordant SGDP 136,389,749 – 136,590,876 201,127.5 0.03613247 3 29.9060 2,006.3
S_Quechua-1B + S_Icelandic-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-2A + S_Oroqen-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_Icelandic-1B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-2A + S_Papuan-8B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Quechua-1B + S_Iranian-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2A + S_Kusunda-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_Tuscan-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2A + S_Mayan-2A Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Quechua-1B + S_Orcadian-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 3 27.0086 2,221.5
S_Igorot-2B + S_Naxi-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_Orcadian-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2B + S_Japanese-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_North_Ossetian-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2B + S_Papuan-14B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Quechua-1B + B_Crete-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 3 15.2658 3,930.4
S_Igorot-2B + S_Madiga-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-1B + S_Saharawi-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-2B + B_Crete-1B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Tubalar-1B + S_Mixe-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Mixtec-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Tubalar-1B + S_Quechua-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Balochi-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Tubalar-1B + S_Yi-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Brahui-1B Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Tubalar-1B + S_Mala-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Pathan-2A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Tubalar-1B + B_Karitiana-3A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Punjabi-4A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Tubalar-1B + S_Karitiana-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Finnish-3A Discordant SGDP 136,590,788 – 136,822,338 231,550.0 0.10311222 3 83.4898 718.7
S_Tubalar-1B + S_Piapoco-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + S_Bergamo-2A Discordant SGDP 136,590,788 – 136,887,641 296,853.0 0.23354324 3 187.8346 319.4
S_Igorot-1A + S_Zapotec-1B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Mayan-1A + S_Polish-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Igorot-1A + S_Han-1A Discordant SGDP 136,070,592 – 136,590,876 520,284.0 0.05307545 3 43.4604 1,380.6
S_Mayan-1A + S_Lezgin-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Igorot-1A + S_Papuan-10B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Mayan-1A + S_Spanish-2B Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 3 15.2658 3,930.4
S_Igorot-1A + S_Papuan-11B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Mayan-1A + S_Yemenite_Jew-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 3 15.2658 3,930.4
S_Igorot-1A + S_Brahmin-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Mayan-1A + B_Mixe-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 3 191.2336 313.8
S_Igorot-1A + S_Madiga-2A Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 3 57.5516 1,042.5
S_Mayan-1A + S_Karitiana-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
S_Quechua-3B + S_Eskimo_Chaplin-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 3 1.0041 59,753.3
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

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