HumanGenomeDating
Atlas of Variant Age
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Examples: LCT, MCM6, EDAR, ZEB1
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TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
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SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

Unmatched Variant ID, using internal ID instead:
X436590795
Alleles:
reference
C
–
alternate
T
–
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Chromosome 2   position  136,590,795  (GRCh37)
Allele frequency in   SGDP ⇪
Sample 94.8%
5.2%
AFR 100.0%
0.0%
AMR 93.2%
6.8%
CAS 87.0%
13.0%
EAS 90.4%
9.6%
OCN 82.0%
18.0%
SAS 98.7%
1.3%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Mutation clock
Data source Estimated age of T allele # pairs = concordant + discordant Quality score
    Genomes in SGDP1,921.8 generations 194  =  99  +  950.687
Pairwise results table Mutation clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Tujia-2B + S_Papuan-12A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 20 189.1986 2,114.2
S_Lahu-1B + S_Kinh-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 32 494.0526 1,295.4
S_Naxi-3A + S_Papuan-14A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 20 189.1986 2,114.2
S_Papuan-14A + S_Igorot-2B Concordant SGDP 136,588,252 – 136,597,375 9,122.5 0.00119254 1 5.3788 3,718.3
S_Igorot-2B + S_Kyrgyz-2B Concordant SGDP 136,588,252 – 136,787,291 199,038.5 0.04669226 23 96.5385 4,764.9
S_Korean-1B + S_Papuan-14A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 18 189.1986 1,902.8
S_Kinh-2B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,787,291 198,053.0 0.04636881 25 96.0654 5,204.8
S_Quechua-1B + S_Ulchi-1B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 10 404.6159 494.3
S_Quechua-1B + S_Tlingit-2A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 17 404.6159 840.3
S_Quechua-3B + S_Igorot-2B Concordant SGDP 136,588,252 – 136,597,375 9,122.5 0.00119254 1 5.3788 3,718.3
S_Quechua-3B + B_Han-3A Concordant SGDP 135,760,098 – 136,646,325 886,227.0 0.08073192 15 426.3890 703.6
S_Quechua-3B + S_Papuan-12A Concordant SGDP 136,389,477 – 136,646,325 256,848.0 0.04784810 15 124.2870 2,413.8
S_Quechua-3B + S_Burmese-2B Concordant SGDP 135,726,038 – 136,646,325 920,286.5 0.21823898 13 442.7375 587.3
S_Quechua-3B + S_Uygur-1B Concordant SGDP 135,760,098 – 136,646,325 886,227.0 0.08073192 18 426.3890 844.3
S_Uygur-1B + S_Igorot-2A Concordant SGDP 136,588,252 – 136,787,770 199,517.5 0.05375054 25 96.7684 5,167.0
S_Quechua-1B + S_Lahu-1B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 16 404.6159 790.9
S_She-2A + S_Papuan-3B Concordant SGDP 136,389,477 – 136,776,289 386,812.0 0.06171828 20 186.6698 2,142.8
S_Quechua-1B + S_Naxi-3A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 14 404.6159 692.0
S_Burmese-2B + S_Igorot-2B Concordant SGDP 136,588,252 – 136,822,937 234,684.5 0.10811666 27 113.6486 4,751.5
S_Quechua-1B + S_Tujia-2B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 13 404.6159 642.6
S_Papuan-3B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 1 4.9058 4,076.8
S_Quechua-1B + S_Dusun-2A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 14 404.6159 692.0
S_Papuan-12A + S_Igorot-2A Concordant SGDP 136,589,238 – 136,590,876 1,638.5 0.00048002 1 1.7865 11,195.2
S_Quechua-1B + S_Papuan-3B Concordant SGDP 136,389,477 – 136,600,964 211,487.5 0.03876999 9 102.5140 1,755.9
S_Mansi-1B + B_Han-3A Concordant SGDP 135,760,098 – 136,652,411 892,313.0 0.08411229 12 429.3102 559.0
S_Quechua-1B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,594,085 4,847.0 0.00066792 1 3.3266 6,012.2
S_Naxi-3A + S_She-2A Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 26 494.0526 1,052.5
S_Mongola-1B + S_Naxi-3A Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 16 494.0526 647.7
S_Tujia-2B + S_Uygur-1B Concordant SGDP 135,760,098 – 136,787,770 1,027,672.0 0.12363655 20 494.2826 809.3
S_Mongola-1B + S_Uygur-1B Concordant SGDP 135,344,431 – 136,787,291 1,442,860.0 0.40225893 35 693.5728 1,009.3
S_Tujia-2B + S_Igorot-2B Concordant SGDP 136,588,860 – 136,821,414 232,553.5 0.10122145 22 112.6257 3,906.7
S_Mongola-1B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 14 189.1986 1,479.9
S_Uygur-1B + B_Han-3A Concordant SGDP 135,760,098 – 136,787,770 1,027,672.0 0.12363655 26 494.2826 1,052.0
S_Mongola-1B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,787,291 198,053.0 0.04636881 23 96.0654 4,788.4
S_She-2A + S_Igorot-2B Concordant SGDP 136,588,252 – 136,787,291 199,038.5 0.04669226 25 96.5385 5,179.3
S_Mongola-1B + S_Pathan-2B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 10 189.1986 1,057.1
S_Burmese-2B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 16 189.1986 1,691.3
S_Yakut-1A + S_She-2A Concordant SGDP 136,040,901 – 136,787,291 746,390.0 0.09919023 18 359.2672 1,002.0
S_Kinh-2B + S_Papuan-1B Concordant SGDP 136,389,477 – 137,040,522 651,045.0 0.42544001 28 313.5016 1,786.3
S_Yakut-1A + S_Igorot-1A Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 24 113.1755 4,241.2
S_Dusun-2A + B_Han-3A Concordant SGDP 135,760,098 – 136,822,937 1,062,839.0 0.17800268 23 511.1627 899.9
S_Yakut-1A + S_Igorot-2A Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 24 113.1755 4,241.2
S_Papuan-14A + S_Papuan-12A Concordant SGDP 135,724,579 – 136,976,448 1,251,869.0 0.46982375 34 601.8971 1,129.8
S_Yakut-1A + S_Kyrgyz-2B Concordant SGDP 136,034,197 – 136,787,291 753,094.0 0.09929345 11 362.4851 606.9
S_Papuan-7A + S_Pathan-2B Concordant SGDP 135,487,023 – 136,785,841 1,298,817.5 0.35520286 46 624.4324 1,473.3
S_Yakut-1A + B_Han-3A Concordant SGDP 136,050,272 – 136,822,937 772,665.0 0.16049637 18 371.8792 968.1
S_Igorot-1A + S_Pathan-2B Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 1 4.9058 4,076.8
S_Tubalar-1B + S_Ulchi-1B Concordant SGDP 136,494,791 – 136,765,325 270,533.5 0.03588847 6 130.8561 917.0
S_Mayan-1A + B_Han-3A Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 13 404.6159 642.6
S_Tubalar-1B + S_Tlingit-2A Concordant SGDP 136,494,791 – 136,822,937 328,145.5 0.12294771 9 158.5098 1,135.6
S_Lahu-1B + S_She-2A Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 27 494.0526 1,093.0
S_Tubalar-1B + S_Lahu-1B Concordant SGDP 136,494,791 – 136,782,063 287,272.0 0.04343793 7 138.8906 1,008.0
S_Lahu-1B + S_Igorot-2B Concordant SGDP 136,588,252 – 136,787,770 199,517.5 0.05375054 22 96.7684 4,546.9
S_Tubalar-1B + S_Tujia-2B Concordant SGDP 136,494,791 – 136,821,414 326,622.5 0.11625204 10 157.7788 1,267.6
S_Naxi-3A + S_Kinh-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 31 494.0526 1,254.9
S_Tubalar-1B + S_Burmese-2B Concordant SGDP 136,494,791 – 136,822,937 328,145.5 0.12294771 13 158.5098 1,640.3
S_Naxi-3A + S_Papuan-12A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 19 189.1986 2,008.5
S_Tubalar-1B + S_Papuan-12A Concordant SGDP 136,495,139 – 136,781,557 286,418.5 0.04305691 13 138.4809 1,877.5
S_Tujia-2B + S_Dusun-2A Concordant SGDP 135,597,516 – 136,821,414 1,223,898.0 0.32984843 17 588.4710 577.8
S_Tubalar-1B + B_Han-3A Concordant SGDP 136,494,791 – 136,822,937 328,145.5 0.12294771 14 158.5098 1,766.5
S_Tujia-2B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,821,414 232,176.0 0.10109755 23 112.4445 4,090.9
S_Ulchi-1B + S_Mansi-1B Concordant SGDP 135,344,431 – 136,652,411 1,307,980.0 0.36979294 12 628.8304 381.7
S_Uygur-1B + S_Papuan-12A Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 24 189.1986 2,537.0
S_Ulchi-1B + S_Lahu-1B Concordant SGDP 135,760,098 – 136,765,325 1,005,227.0 0.09094344 11 483.5090 455.0
S_Uygur-1B + S_Igorot-2B Concordant SGDP 136,589,238 – 136,787,770 198,532.0 0.05342709 24 96.2954 4,984.7
S_Ulchi-1B + S_She-2A Concordant SGDP 135,760,098 – 136,765,325 1,005,227.0 0.09094344 23 483.5090 951.4
S_She-2A + S_Burmese-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 28 494.0526 1,133.5
S_Ulchi-1B + S_Burmese-2B Concordant SGDP 135,344,431 – 136,765,325 1,420,894.0 0.37662410 17 683.0291 497.8
S_She-2A + S_Igorot-2A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 1 4.9058 4,076.8
S_Ulchi-1B + S_Papuan-7A Concordant SGDP 136,389,477 – 136,765,325 375,848.0 0.05805962 14 181.4070 1,543.5
S_Korean-1B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 12 189.1986 1,268.5
S_Ulchi-1B + S_Igorot-2A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 1 4.9058 4,076.8
S_Burmese-2B + S_Kinh-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 33 494.0526 1,335.9
S_Tlingit-2A + S_Korean-1B Concordant SGDP 136,032,499 – 137,041,418 1,008,918.5 0.45306680 13 485.2809 535.8
S_Burmese-2B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 28 113.1755 4,948.1
S_Tlingit-2A + S_Igorot-2B Concordant SGDP 136,589,238 – 136,822,937 233,699.0 0.10779321 22 113.1755 3,887.8
S_Kinh-2B + S_Papuan-3B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 17 189.1986 1,797.1
S_Tlingit-2A + S_Pathan-2B Concordant SGDP 136,389,477 – 136,781,557 392,080.5 0.06530670 9 189.1986 951.4
S_Kinh-2B + S_Papuan-7A Concordant SGDP 136,389,477 – 137,040,522 651,045.0 0.42544001 32 313.5016 2,041.5
S_Mansi-1B + S_Lahu-1B Concordant SGDP 135,034,928 – 136,652,411 1,617,482.5 0.88096895 24 777.3916 617.4
S_Kinh-2B + S_Kyrgyz-2B Concordant SGDP 135,760,098 – 136,787,291 1,027,193.0 0.11657828 39 494.0526 1,578.8
S_Mansi-1B + S_Korean-1B Concordant SGDP 136,034,197 – 136,652,411 618,214.0 0.06682746 6 297.7427 403.0
S_Papuan-3B + S_Papuan-12A Concordant SGDP 135,768,194 – 136,785,841 1,017,646.5 0.09641744 43 489.4703 1,757.0
S_Mansi-1B + S_Burmese-2B Concordant SGDP 135,340,792 – 136,652,411 1,311,618.5 0.37587806 10 630.5769 317.2
S_Papuan-1B + S_Papuan-12A Concordant SGDP 135,760,098 – 136,976,448 1,216,350.0 0.32693006 23 584.8480 786.5
S_Mansi-1B + S_Dusun-2A Concordant SGDP 135,726,038 – 136,652,411 926,372.5 0.22161935 10 445.6588 448.8
S_Papuan-14A + S_Igorot-1A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 1 4.9058 4,076.8
S_Mansi-1B + S_Papuan-1B Concordant SGDP 136,389,477 – 136,643,760 254,283.5 0.04733802 6 123.0561 975.2
S_Papuan-14A + S_Pathan-2B Concordant SGDP 135,760,098 – 136,785,841 1,025,743.0 0.10319507 40 493.3566 1,621.5
S_Mansi-1B + S_Papuan-14A Concordant SGDP 136,389,477 – 136,643,760 254,283.5 0.04733802 12 123.0561 1,950.3
S_Papuan-12A + S_Igorot-1A Concordant SGDP 136,589,238 – 136,590,876 1,638.5 0.00048002 1 1.7865 11,195.2
S_Mansi-1B + S_Papuan-7A Concordant SGDP 136,389,477 – 136,643,760 254,283.5 0.04733802 7 123.0561 1,137.7
S_Igorot-1A + S_Igorot-2A Concordant SGDP 135,340,792 – 137,900,683 2,559,891.0 1.57700306 37 1,229.7477 601.7
S_Mansi-1B + S_Igorot-1A Concordant SGDP 136,589,238 – 136,597,375 8,137.0 0.00086909 1 4.9058 4,076.8
S_Igorot-2B + S_Pathan-2B Concordant SGDP 136,588,252 – 136,597,375 9,122.5 0.00119254 1 5.3788 3,718.3
S_Mansi-1B + S_Pathan-2B Concordant SGDP 136,389,477 – 136,652,411 262,934.0 0.05122847 3 127.2083 471.7
S_Quechua-3B + S_Lahu-1B Concordant SGDP 135,760,098 – 136,646,325 886,227.0 0.08073192 15 426.3890 703.6
S_Mayan-1A + S_Quechua-3B Concordant SGDP 135,597,516 – 136,600,964 1,003,448.5 0.23019522 12 482.6553 497.2
S_Quechua-3B + S_Quechua-1B Concordant SGDP 135,760,098 – 136,600,964 840,866.5 0.07165381 15 404.6159 741.4
S_Igorot-2A + S_Irula-2B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 41 399.7737 2,051.2
S_Igorot-2B + S_Mixtec-1B Discordant SGDP 135,477,509 – 136,590,876 1,113,367.0 0.32493375 92 535.4162 3,436.6
S_Quechua-3B + S_Korean-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2A + S_Han-2B Discordant SGDP 135,597,516 – 136,590,876 993,360.5 0.22923090 50 477.8130 2,092.9
S_Mayan-1A + S_English-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 19 158.9805 2,390.2
S_Mayan-1A + S_Spanish-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 20 158.9805 2,516.0
S_Quechua-1B + S_Xibo-1B Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 15 83.2065 3,605.5
S_Mayan-1A + S_Maori-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 21 158.9805 2,641.8
S_Quechua-1B + S_Aleut-2B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Quechua-1B + S_Miao-2A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 15 94.6252 3,170.4
S_Quechua-1B + S_Tlingit-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Quechua-1B + S_Mongola-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 14 83.2065 3,365.1
S_Quechua-3B + S_Itelman-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2B + S_Bougainville-2A Discordant SGDP 135,760,098 – 136,774,712 1,014,614.0 0.09342975 80 488.0147 3,278.6
S_Quechua-1B + S_Yi-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2B + S_Palestinian-1A Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 47 399.7737 2,351.3
S_Quechua-1B + S_Xibo-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 16 83.2065 3,845.9
S_Mayan-1A + S_Makrani-2A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 21 158.9805 2,641.8
S_Quechua-1B + S_Kinh-2A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 14 94.6252 2,959.0
S_Mayan-1A + S_Orcadian-1B Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 20 158.9805 2,516.0
S_Quechua-1B + S_Chukchi-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 15 94.6252 3,170.4
S_Mayan-1A + B_French-3B Discordant SGDP 136,590,788 – 136,822,338 231,550.0 0.10311222 16 112.1440 2,853.5
S_Quechua-1B + S_Brahmin-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-1A + S_Chane-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_Punjabi-2B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Igorot-2A + S_She-1B Discordant SGDP 135,597,516 – 136,822,338 1,224,822.5 0.33233796 65 588.9148 2,207.5
S_Quechua-1B + S_Bulgarian-1A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 14 83.2065 3,365.1
S_Igorot-2A + S_Makrani-2B Discordant SGDP 136,114,914 – 136,590,876 475,962.0 0.04952598 33 229.4618 2,876.3
S_Quechua-1B + S_Atayal-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 15 94.6252 3,170.4
S_Igorot-2B + S_Hezhen-2B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 68 399.7737 3,401.9
S_Quechua-1B + S_English-1B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Igorot-2B + S_Relli-1B Discordant SGDP 135,760,098 – 136,785,841 1,025,743.0 0.10319507 45 493.3566 1,824.2
S_Quechua-1B + S_English-2A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 19 94.6252 4,015.8
S_Mayan-1A + S_Mixe-3A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 17 158.9805 2,138.6
S_Quechua-1B + S_Estonian-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Brahui-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 20 158.9805 2,516.0
S_Quechua-1B + S_Estonian-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Mayan-1A + S_Hazara-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_Finnish-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Greek-2B Discordant SGDP 136,590,788 – 136,822,338 231,550.0 0.10311222 14 112.1440 2,496.8
S_Quechua-1B + S_Finnish-3B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 16 94.6252 3,381.8
S_Mayan-1A + S_Lezgin-2B Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 21 158.9805 2,641.8
S_Quechua-1B + S_Saami-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Tajik-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_French-2B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Mayan-1A + S_Surui-2A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 17 158.9805 2,138.6
S_Quechua-1B + S_Basque-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Igorot-1A + S_Punjabi-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_Basque-1B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Igorot-2A + S_Ulchi-2B Discordant SGDP 136,389,749 – 136,590,876 201,127.5 0.03613247 20 97.5412 4,100.8
S_Quechua-1B + S_Icelandic-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 18 94.6252 3,804.5
S_Igorot-2A + S_Oroqen-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_Icelandic-1B Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Igorot-2A + S_Papuan-8B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 74 399.7737 3,702.1
S_Quechua-1B + S_Iranian-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2A + S_Kusunda-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_Tuscan-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2A + S_Mayan-2A Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 49 399.7737 2,451.4
S_Quechua-1B + S_Orcadian-1A Discordant SGDP 136,590,788 – 136,785,841 195,052.5 0.03251074 17 94.6252 3,593.1
S_Igorot-2B + S_Naxi-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_Orcadian-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2B + S_Japanese-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_North_Ossetian-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2B + S_Papuan-14B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 41 399.7737 2,051.2
S_Quechua-1B + B_Crete-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 13 83.2065 3,124.8
S_Igorot-2B + S_Madiga-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-1B + S_Saharawi-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-2B + B_Crete-1B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 131 399.7737 6,553.7
S_Tubalar-1B + S_Mixe-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Mixtec-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 17 158.9805 2,138.6
S_Tubalar-1B + S_Quechua-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Balochi-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Tubalar-1B + S_Yi-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Brahui-1B Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 21 158.9805 2,641.8
S_Tubalar-1B + S_Mala-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Pathan-2A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 25 158.9805 3,145.0
S_Tubalar-1B + B_Karitiana-3A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Punjabi-4A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Tubalar-1B + S_Karitiana-2B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Finnish-3A Discordant SGDP 136,590,788 – 136,822,338 231,550.0 0.10311222 16 112.1440 2,853.5
S_Tubalar-1B + S_Piapoco-2A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + S_Bergamo-2A Discordant SGDP 136,590,788 – 136,887,641 296,853.0 0.23354324 19 143.4894 2,648.3
S_Igorot-1A + S_Zapotec-1B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 51 399.7737 2,551.4
S_Mayan-1A + S_Polish-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Igorot-1A + S_Han-1A Discordant SGDP 136,070,592 – 136,590,876 520,284.0 0.05307545 35 250.7363 2,791.8
S_Mayan-1A + S_Lezgin-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 23 158.9805 2,893.4
S_Igorot-1A + S_Papuan-10B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 40 399.7737 2,001.1
S_Mayan-1A + S_Spanish-2B Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 13 83.2065 3,124.8
S_Igorot-1A + S_Papuan-11B Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 32 399.7737 1,600.9
S_Mayan-1A + S_Yemenite_Jew-2A Discordant SGDP 136,590,788 – 136,762,052 171,263.5 0.01783227 14 83.2065 3,365.1
S_Igorot-1A + S_Brahmin-1A Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Mayan-1A + B_Mixe-1A Discordant SGDP 136,590,788 – 136,919,914 329,126.0 0.23779197 17 158.9805 2,138.6
S_Igorot-1A + S_Madiga-2A Discordant SGDP 135,760,098 – 136,590,876 830,778.5 0.07068949 38 399.7737 1,901.1
S_Mayan-1A + S_Karitiana-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
S_Quechua-3B + S_Eskimo_Chaplin-1B Discordant SGDP 136,590,788 – 136,590,876 88.0 0.00000516 2 1.0422 38,378.9
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

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