Populations:	`26`
Individuals:	`2,535`
Ancestry analyses:	`565,507,800`

Populations:	`130`
Individuals:	`278`
Ancestry analyses:	`6,800,992`

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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs111960969

Alleles:

reference

ancestral

alternate

derived

Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.

How was the ancestral/derived state determined?Chromosome 10 position 31,765,532 (GRCh37)

Explore rs111960969 on Ensembl!

ShowHide allele frequencies

Allele frequency in SGDP ⇪

Sample	`99.3%`		`0.7%`
`AFR`	`95.5%`		`4.5%`
`AMR`	`100.0%`		`0.0%`
`CAS`	`100.0%`		`0.0%`
`EAS`	`100.0%`		`0.0%`
`OCN`	`100.0%`		`0.0%`
`SAS`	`100.0%`		`0.0%`
`WEA`	`100.0%`		`0.0%`
	reference	← allele frequency →	alternate

Select clock model

Mutation clock

Recombination clock

Joint clock

Age estimation summary Recombination clock

Data source	Estimated age of `T` allele	# pairs = concordant + discordant	Quality score
Genomes in SGDP	`1,079.3` generations	`104` = `6` + `98`	`1.000`

Pairwise results table Recombination clock

Haplotype pair	Pair type	Data source	Breakpoint positions	Physical length (bp)	Genetic Length (cM)	α	β	Mean TMRCA (generations)
S_Ju_hoan_North-3A + S_Khomani_San-2A	Concordant	SGDP	`31,092,468` – `31,824,938`	`732,470.0`	`0.30228466`	3	242.8277	247.1
S_Khomani_San-2A + S_Khomani_San-1B	Concordant	SGDP	`30,998,177` – `31,824,938`	`826,760.5`	`0.47080762`	3	377.6461	158.9
S_Ju_hoan_North-1A + S_Khomani_San-1B	Concordant	SGDP	`31,107,575` – `32,162,772`	`1,055,197.0`	`0.71285433`	3	571.2835	105.0
S_Ju_hoan_North-1A + S_Khomani_San-2A	Concordant	SGDP	`31,107,575` – `31,824,938`	`717,363.0`	`0.29153703`	3	234.2296	256.2
S_Ju_hoan_North-3A + S_Khomani_San-1B	Concordant	SGDP	`31,092,468` – `31,870,414`	`777,946.0`	`0.33267586`	3	267.1407	224.6
S_Ju_hoan_North-3A + S_Ju_hoan_North-1A	Concordant	SGDP	`31,107,575` – `31,870,414`	`762,839.0`	`0.32192823`	3	258.5426	232.1
S_Khomani_San-2A + S_Irula-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Chukchi-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Piapoco-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Russian-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_French-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Abkhasian-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Papuan-3B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Maori-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Mozabite-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Madiga-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Pathan-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Mansi-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Estonian-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Khonda_Dora-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Palestinian-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Kalash-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + B_French-3B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Burusho-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-1B + S_Papuan-14B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Finnish-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Dusun-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Georgian-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Kapu-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Icelandic-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Mala-3A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Iranian-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Kusunda-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Bergamo-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Burusho-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Chechen-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Luhya-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Spanish-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Saami-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + S_Turkish-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Iraqi_Jew-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-3A + B_Sardinian-3A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Jordanian-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-1A + S_Papuan-3B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + B_Dai-4A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Ju_hoan_North-1A + S_Polish-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Chane-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Quechua-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-1B + S_Papuan-5B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Mongola-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-1B + S_Papuan-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Mongola-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + B_Australian-4B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Tubalar-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Maori-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Altaian-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Itelman-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Tubalar-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Relli-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Ulchi-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Yadava-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Ulchi-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Brahmin-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Even-3B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Madiga-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Even-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Makrani-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Yakut-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Pathan-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Aleut-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Kalash-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Naxi-3B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Bulgarian-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Miao-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_English-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Han-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Finnish-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Tu-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Saami-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Daur-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Iranian-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Oroqen-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Iraqi_Jew-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Uygur-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Bergamo-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Yi-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Orcadian-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Uygur-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Lezgin-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_She-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + B_French-3A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_She-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + B_Papuan-15A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Korean-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Karitiana-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Burmese-1A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Pima-2B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Ami-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-1B + S_Papuan-4B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Thai-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-1B + S_Papuan-9A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + S_Kinh-2A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-1B + S_Sardinian-1B	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8
S_Khomani_San-2A + B_Australian-3A	Discordant	SGDP	`31,765,517` – `31,765,536`	`19.5`	`0.00000002`	3	1.0000	59,998.8

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Data shown in this table can be downloaded from this page.

Mean TMRCA	Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
α	Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β	Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).