Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs534093032
Alleles:
reference
Tancestral
alternate
Gderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 
Explore
2
position 136,573,630 (GRCh37)
Explore rs534093032 on Ensembl!
Allele frequency in SGDP ⇪
| Sample | 99.6% |
0.4% |
|
AFR |
97.7% |
2.3% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
| reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
| Data source | Estimated age of G allele |
# pairs = concordant + discordant | Quality score |
|---|---|---|---|
| Genomes in SGDP | 1,190.5 generations | 98 = 1 + 97 | 0.990 |
Pairwise results table
| Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
|---|---|---|---|---|---|---|---|---|
| S_Ju_hoan_North-3B + S_Ju_hoan_North-2B | Concordant | SGDP | 135,141,319 – 136,573,639 |
1,432,319.5 |
0.80128332 |
52 | 1,329.5400 | 782.2 |
| S_Ju_hoan_North-2B + S_Czech-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Punjabi-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Mansi-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Karitiana-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Adygei-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Tuscan-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_French-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Eskimo_Chaplin-1A | Discordant | SGDP | 135,759,069 – 136,762,052 |
1,002,983.0 |
0.09320676 |
113 | 556.9972 | 4,057.5 |
| S_Ju_hoan_North-3B + S_Even-2A | Discordant | SGDP | 136,556,402 – 136,739,216 |
182,814.0 |
0.02242194 |
20 | 106.6883 | 3,749.2 |
| S_Ju_hoan_North-3B + S_Eskimo_Sireniki-1B | Discordant | SGDP | 136,549,528 – 136,762,052 |
212,524.0 |
0.02737236 |
23 | 124.9094 | 3,682.7 |
| S_Ju_hoan_North-3B + S_Eskimo_Sireniki-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Aleut-1A | Discordant | SGDP | 136,549,528 – 136,762,052 |
212,524.0 |
0.02737236 |
26 | 124.9094 | 4,163.0 |
| S_Ju_hoan_North-3B + S_Ulchi-1A | Discordant | SGDP | 136,549,528 – 136,762,052 |
212,524.0 |
0.02737236 |
23 | 124.9094 | 3,682.7 |
| S_Ju_hoan_North-3B + S_BantuHerero-1B | Discordant | SGDP | 136,493,766 – 136,762,052 |
268,286.0 |
0.03370694 |
30 | 156.7428 | 3,827.9 |
| S_Ju_hoan_North-2B + S_BantuKenya-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Finnish-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Eskimo_Chaplin-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Icelandic-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Even-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Orcadian-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Oroqen-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + B_Crete-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Oroqen-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Kinh-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Uygur-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Hazara-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Itelman-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Bulgarian-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Eskimo_Naukan-2B | Discordant | SGDP | 136,549,528 – 136,762,052 |
212,524.0 |
0.02737236 |
26 | 124.9094 | 4,163.0 |
| S_Ju_hoan_North-2B + S_English-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Eskimo_Sireniki-2A | Discordant | SGDP | 135,759,069 – 136,762,052 |
1,002,983.0 |
0.09320676 |
116 | 556.9972 | 4,165.2 |
| S_Ju_hoan_North-2B + S_Estonian-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Irula-1B | Discordant | SGDP | 136,559,711 – 136,762,052 |
202,341.0 |
0.02182570 |
28 | 115.5842 | 4,845.0 |
| S_Ju_hoan_North-2B + S_Saami-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Somali-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Georgian-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Pathan-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Iranian-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Burusho-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Kyrgyz-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Punjabi-3B | Discordant | SGDP | 136,493,766 – 136,739,216 |
245,450.0 |
0.03252613 |
28 | 144.8369 | 3,866.4 |
| S_Ju_hoan_North-2B + S_North_Ossetian-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Abkhasian-1A | Discordant | SGDP | 136,549,528 – 136,762,052 |
212,524.0 |
0.02737236 |
24 | 124.9094 | 3,842.8 |
| S_Ju_hoan_North-2B + S_Yemenite_Jew-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Albanian-1A | Discordant | SGDP | 135,759,069 – 136,762,052 |
1,002,983.0 |
0.09320676 |
112 | 556.9972 | 4,021.6 |
| S_Ju_hoan_North-2B + B_Ju_hoan_North-4A | Discordant | SGDP | 136,341,972 – 137,040,044 |
698,072.0 |
0.42820263 |
65 | 678.6367 | 1,915.6 |
| S_Ju_hoan_North-3B + S_Bulgarian-1B | Discordant | SGDP | 136,555,141 – 136,739,216 |
184,074.5 |
0.02483808 |
21 | 109.2262 | 3,845.2 |
| S_Ju_hoan_North-3B + S_Mixe-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Bulgarian-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Chukchi-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Estonian-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Brahmin-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Saami-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Sindhi-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Hungarian-2A | Discordant | SGDP | 136,552,013 – 136,762,052 |
210,038.5 |
0.02710925 |
25 | 123.5059 | 4,048.4 |
| S_Ju_hoan_North-2B + S_Punjabi-4A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Palestinian-1B | Discordant | SGDP | 136,555,141 – 136,654,786 |
99,644.5 |
0.02265865 |
12 | 66.9563 | 3,584.4 |
| S_Ju_hoan_North-2B + S_Atayal-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Sardinian-1A | Discordant | SGDP | 136,555,141 – 136,739,216 |
184,074.5 |
0.02483808 |
22 | 109.2262 | 4,028.3 |
| S_Ju_hoan_North-2B + S_English-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Tuscan-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_English-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Jordanian-3B | Discordant | SGDP | 136,549,528 – 136,762,052 |
212,524.0 |
0.02737236 |
24 | 124.9094 | 3,842.8 |
| S_Ju_hoan_North-2B + S_Estonian-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Orcadian-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Estonian-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Ju_hoan_North-2A | Discordant | SGDP | 136,411,978 – 137,134,525 |
722,547.0 |
0.65104046 |
25 | 868.6549 | 575.6 |
| S_Ju_hoan_North-2B + S_Finnish-3A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Spanish-1B | Discordant | SGDP | 136,555,141 – 136,762,052 |
206,910.5 |
0.02601890 |
22 | 121.1322 | 3,632.4 |
| S_Ju_hoan_North-2B + S_French-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Tajik-2A | Discordant | SGDP | 136,494,791 – 136,739,216 |
244,424.5 |
0.03228080 |
30 | 144.1484 | 4,162.4 |
| S_Ju_hoan_North-2B + S_Basque-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + B_Papuan-15A | Discordant | SGDP | 136,493,766 – 136,739,216 |
245,450.0 |
0.03252613 |
27 | 144.8369 | 3,728.3 |
| S_Ju_hoan_North-2B + S_Greek-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + B_Sardinian-3B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Icelandic-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + B_Karitiana-3A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Druze-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-3B + S_Chane-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Jordanian-3A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Mozabite-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Norwegian-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Mongola-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Orcadian-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Tlingit-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Adygei-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Aleut-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Turkish-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Uygur-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Yemenite_Jew-1A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Xibo-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Ju_hoan_North-1B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Yi-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Saharawi-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Mozabite-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Piapoco-2B | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
| S_Ju_hoan_North-2B + S_Xibo-2A | Discordant | SGDP | 136,573,630 – 136,573,639 |
9.0 |
0.00000031 |
4 | 1.0046 | 79,635.9 |
Data shown in this table can be downloaded from this page.
| α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
|---|
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