HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs574660834
Alleles:
reference
G
ancestral
alternate
A
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 2   position  136,572,212  (GRCh37) Explore rs574660834 on Ensembl!
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 97.7%
2.3%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 100.0%
0.0%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Joint clock
Data source Estimated age of A allele # pairs = concordant + discordant Quality score
    Genomes in SGDP1,209.0 generations 95  =  1  +  940.989
Pairwise results table Joint clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Ju_hoan_North-3B + S_Ju_hoan_North-2B Concordant SGDP 135,141,319 – 136,574,082 1,432,763.0 0.80129880 52 1,329.7653 782.1
S_Ju_hoan_North-2B + S_Atayal-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Sindhi-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Chukchi-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Mixe-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Yemenite_Jew-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Kyrgyz-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_French-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Eskimo_Chaplin-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Even-2A Discordant SGDP 136,556,402 – 136,739,216 182,814.0 0.02242194 20 106.6883 3,749.2
S_Ju_hoan_North-3B + S_Eskimo_Sireniki-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Aleut-1B Discordant SGDP 136,549,528 – 136,762,052 212,524.0 0.02737236 26 124.9094 4,163.0
S_Ju_hoan_North-3B + S_Ulchi-1A Discordant SGDP 136,549,528 – 136,762,052 212,524.0 0.02737236 23 124.9094 3,682.7
S_Ju_hoan_North-3B + S_BantuHerero-1B Discordant SGDP 136,493,766 – 136,762,052 268,286.0 0.03370694 30 156.7428 3,827.9
S_Ju_hoan_North-2B + S_Estonian-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Finnish-3A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Even-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Icelandic-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Oroqen-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_North_Ossetian-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Oroqen-2A Discordant SGDP 136,493,766 – 136,739,216 245,450.0 0.03252613 29 144.8369 4,004.5
S_Ju_hoan_North-2B + B_Ju_hoan_North-4B Discordant SGDP 136,572,208 – 136,976,283 404,075.5 0.25208214 89 396.6219 4,487.9
S_Ju_hoan_North-3B + S_Uygur-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Xibo-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Itelman-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Burusho-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Eskimo_Naukan-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Punjabi-4A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Eskimo_Sireniki-2A Discordant SGDP 135,759,069 – 136,762,052 1,002,983.0 0.09320676 116 556.9972 4,165.2
S_Ju_hoan_North-2B + S_English-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Irula-1B Discordant SGDP 136,559,711 – 136,762,052 202,341.0 0.02182570 28 115.5842 4,845.0
S_Ju_hoan_North-2B + S_Estonian-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Somali-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_BantuKenya-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Pathan-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Georgian-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Burusho-1B Discordant SGDP 135,759,069 – 136,762,052 1,002,983.0 0.09320676 119 556.9972 4,272.9
S_Ju_hoan_North-2B + S_Druze-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Punjabi-3B Discordant SGDP 136,493,766 – 136,739,216 245,450.0 0.03252613 28 144.8369 3,866.4
S_Ju_hoan_North-2B + S_Orcadian-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Abkhasian-1B Discordant SGDP 136,555,141 – 136,762,052 206,910.5 0.02601890 24 121.1322 3,962.6
S_Ju_hoan_North-2B + S_Adygei-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Albanian-1A Discordant SGDP 135,759,069 – 136,762,052 1,002,983.0 0.09320676 112 556.9972 4,021.6
S_Ju_hoan_North-2B + B_Crete-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Bulgarian-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Karitiana-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Bulgarian-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Dai-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Estonian-2A Discordant SGDP 136,473,791 – 136,677,400 203,609.0 0.03495840 23 126.6990 3,630.7
S_Ju_hoan_North-2B + S_Kinh-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Saami-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Brahmin-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Hungarian-2B Discordant SGDP 136,555,141 – 136,739,216 184,074.5 0.02483808 23 109.2262 4,211.4
S_Ju_hoan_North-2B + S_Hazara-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Palestinian-1B Discordant SGDP 136,555,141 – 136,654,786 99,644.5 0.02265865 12 66.9563 3,584.4
S_Ju_hoan_North-2B + S_Punjabi-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Sardinian-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Bulgarian-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Tuscan-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Czech-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Jordanian-3B Discordant SGDP 136,549,528 – 136,762,052 212,524.0 0.02737236 24 124.9094 3,842.8
S_Ju_hoan_North-2B + S_English-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Orcadian-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Estonian-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Ju_hoan_North-2A Discordant SGDP 136,411,978 – 137,134,525 722,547.0 0.65104046 25 868.6549 575.6
S_Ju_hoan_North-2B + S_Finnish-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Spanish-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Finnish-3B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Tajik-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Saami-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + B_Papuan-15B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Basque-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + B_Sardinian-3B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Icelandic-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + B_Karitiana-3A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Iranian-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-3B + S_Chane-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Tuscan-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Mozabite-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Norwegian-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Mongola-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Orcadian-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Tlingit-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Adygei-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Aleut-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Turkish-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Miao-1A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Yemenite_Jew-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Uygur-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Ju_hoan_North-1B Discordant SGDP 136,555,141 – 136,572,288 17,147.0 0.00474486 8 13.0264 12,282.7
S_Ju_hoan_North-2B + S_Xibo-1B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Saharawi-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Yi-2B Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Piapoco-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
S_Ju_hoan_North-2B + S_Mozabite-2A Discordant SGDP 136,572,208 – 136,572,288 80.5 0.00000281 4 1.0409 76,857.5
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2026 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.