HumanGenomeDating
Atlas of Variant Age
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Examples: LCT, MCM6, EDAR, ZEB1
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TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
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SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs767701257
Alleles:
reference
A
ancestral
alternate
G
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 10   position  31,794,842  (GRCh37) Explore rs767701257 on Ensembl!
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 98.9%
1.1%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 99.3%
0.7%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Joint clock
Data source Estimated age of G allele # pairs = concordant + discordant Quality score
    Genomes in SGDP594.4 generations 96  =  1  +  951.000
Pairwise results table Joint clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Uygur-2B + S_Estonian-2A Concordant SGDP 31,134,154 – 31,870,414 736,260.0 0.28372314 14 581.3833 481.6
S_Uygur-2B + S_BedouinB-2B Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 47 819.6733 1,146.8
S_Uygur-2B + S_Druze-2A Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 10 138.2450 1,446.7
S_Uygur-2B + S_Iranian-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Zapotec-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 13 157.3398 1,652.5
S_Estonian-2A + S_Madiga-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 7 55.1491 2,538.6
S_Uygur-2B + S_Chane-1A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 7 55.1491 2,538.6
S_Uygur-2B + S_North_Ossetian-2B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 6 55.1491 2,175.9
S_Uygur-2B + S_Even-3A Discordant SGDP 31,794,828 – 31,868,351 73,523.0 0.00557717 5 40.7528 2,453.8
S_Uygur-2B + S_Yakut-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 12 157.3398 1,525.4
S_Uygur-2B + S_Mongola-1B Discordant SGDP 31,727,319 – 31,794,897 67,578.0 0.00252339 6 35.4561 3,384.5
S_Uygur-2B + S_Quechua-1A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 7 55.1491 2,538.6
S_Uygur-2B + S_Quechua-3A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 15 157.3398 1,906.7
S_Uygur-2B + S_Mixe-3A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Mixe-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 6 55.1491 2,175.9
S_Uygur-2B + S_Tuscan-2A Discordant SGDP 31,073,594 – 31,868,351 794,757.0 0.32785192 66 644.7649 2,047.3
S_Uygur-2B + S_Orcadian-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 8 55.1491 2,901.2
S_Uygur-2B + S_Yakut-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Yemenite_Jew-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Tlingit-1A Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 44 819.6733 1,073.6
S_Uygur-2B + S_Karitiana-2A Discordant SGDP 31,687,839 – 32,451,906 764,066.5 0.48680698 47 757.1975 1,241.4
S_Uygur-2B + S_Aleut-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Estonian-2A + S_Finnish-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Naxi-2B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 15 157.3398 1,906.7
S_Uygur-2B + S_Saami-2A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 12 157.3398 1,525.4
S_Uygur-2B + S_Naxi-3A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Iraqi_Jew-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 17 211.1397 1,610.3
S_Uygur-2B + S_Tu-2A Discordant SGDP 31,794,828 – 31,795,978 1,149.5 0.00020745 4 1.7177 46,573.5
S_Uygur-2B + S_Palestinian-1B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 7 55.1491 2,538.6
S_Uygur-2B + S_Uygur-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Bergamo-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Yi-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Jordanian-2B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 8 55.1491 2,901.2
S_Uygur-2B + S_She-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Abkhasian-2B Discordant SGDP 31,073,594 – 31,794,897 721,303.0 0.32228073 76 605.0500 2,512.2
S_Uygur-2B + S_Korean-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Turkish-2B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 14 157.3398 1,779.6
S_Uygur-2B + S_Korean-1A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 15 211.1397 1,420.9
S_Uygur-2B + B_French-3A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 13 157.3398 1,652.5
S_Uygur-2B + S_Burmese-2A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 14 211.1397 1,326.1
S_Uygur-2B + S_Surui-2A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 14 211.1397 1,326.1
S_Uygur-2B + S_Burmese-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Pima-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 14 211.1397 1,326.1
S_Uygur-2B + S_Thai-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Estonian-2A + S_Czech-2B Discordant SGDP 31,697,077 – 31,841,841 144,764.5 0.00639662 6 75.6043 1,587.2
S_Uygur-2B + S_Thai-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 15 211.1397 1,420.9
S_Estonian-2A + B_French-3B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Maori-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Saami-1B Discordant SGDP 31,794,828 – 32,451,906 657,077.5 0.48336143 48 703.0863 1,365.4
S_Uygur-2B + S_Bougainville-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Icelandic-1A Discordant SGDP 31,575,111 – 31,868,351 293,240.5 0.01288349 14 152.0622 1,841.4
S_Uygur-2B + S_Igorot-1A Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 61 819.6733 1,488.4
S_Uygur-2B + S_Iraqi_Jew-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 7 55.1491 2,538.6
S_Uygur-2B + S_Hawaiian-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Iraqi_Jew-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Chukchi-1A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 6 55.1491 2,175.9
S_Uygur-2B + S_Palestinian-2B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 19 157.3398 2,415.2
S_Uygur-2B + S_Chukchi-1B Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 6 50.3571 2,383.0
S_Uygur-2B + S_BedouinB-2A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 18 211.1397 1,705.0
S_Uygur-2B + S_Eskimo_Naukan-1B Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 6 50.3571 2,383.0
S_Uygur-2B + S_Bergamo-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 13 157.3398 1,652.5
S_Uygur-2B + S_Eskimo_Naukan-2A Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 6 50.3571 2,383.0
S_Uygur-2B + S_Sardinian-1B Discordant SGDP 31,134,695 – 31,841,841 707,146.0 0.24835638 67 539.1152 2,485.6
S_Uygur-2B + S_Mala-3A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Jordanian-2A Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 5 50.3571 1,985.8
S_Uygur-2B + S_Madiga-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Jordanian-1A Discordant SGDP 31,484,549 – 32,451,906 967,356.5 0.51017773 44 873.4733 1,007.5
S_Uygur-2B + S_Makrani-1B Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 49 819.6733 1,195.6
S_Uygur-2B + S_Russian-2B Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 10 138.2450 1,446.7
S_Uygur-2B + S_Pathan-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_North_Ossetian-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 11 157.3398 1,398.2
S_Uygur-2B + S_Brahui-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 16 157.3398 2,033.8
S_Uygur-2B + S_Spanish-1A Discordant SGDP 31,601,307 – 31,795,978 194,671.0 0.00595989 9 99.2100 1,814.3
S_Uygur-2B + S_Burusho-1A Discordant SGDP 31,687,839 – 32,451,906 764,066.5 0.48680698 46 757.1975 1,215.0
S_Uygur-2B + S_Turkish-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 14 157.3398 1,779.6
S_Uygur-2B + S_Burusho-2B Discordant SGDP 31,565,428 – 31,841,841 276,413.0 0.01149221 14 142.8720 1,959.8
S_Uygur-2B + S_Yemenite_Jew-1B Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 71 553.5829 2,565.1
S_Uygur-2B + S_Hazara-1B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 6 55.1491 2,175.9
S_Uygur-2B + B_Mixe-1B Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 6 50.3571 2,383.0
S_Uygur-2B + S_Sindhi-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 11 157.3398 1,398.2
S_Uygur-2B + S_Surui-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Sindhi-1B Discordant SGDP 31,697,077 – 32,451,906 754,829.0 0.48635957 48 752.4056 1,275.9
S_Uygur-2B + S_Surui-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 14 211.1397 1,326.1
S_Uygur-2B + S_Sindhi-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Piapoco-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Punjabi-1B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 7 55.1491 2,538.6
S_Estonian-2A + S_Ulchi-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Armenian-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 15 211.1397 1,420.9
S_Estonian-2A + S_Kalash-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Bulgarian-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 15 157.3398 1,906.7
S_Estonian-2A + S_English-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Luhya-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Estonian-2A + S_Polish-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Czech-2B Discordant SGDP 31,601,307 – 32,501,510 900,203.5 0.62948963 52 936.6894 1,110.3
S_Estonian-2A + S_Karitiana-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 4 1.0379 77,078.7
S_Uygur-2B + S_Saami-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 10 157.3398 1,271.1
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

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