HumanGenomeDating
Atlas of Variant Age
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Examples: LCT, MCM6, EDAR, ZEB1
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TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
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SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs767701257
Alleles:
reference
A
ancestral
alternate
G
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 10   position  31,794,842  (GRCh37) Explore rs767701257 on Ensembl!
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 98.9%
1.1%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 99.3%
0.7%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Mutation clock
Data source Estimated age of G allele # pairs = concordant + discordant Quality score
    Genomes in SGDP546.0 generations 96  =  1  +  951.000
Pairwise results table Mutation clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Uygur-2B + S_Estonian-2A Concordant SGDP 31,134,154 – 31,870,414 736,260.0 0.28372314 12 354.4048 677.2
S_Uygur-2B + S_BedouinB-2B Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 45 426.5092 2,110.2
S_Uygur-2B + S_Druze-2A Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 8 129.1814 1,238.6
S_Uygur-2B + S_Iranian-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Zapotec-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 11 146.4030 1,502.7
S_Estonian-2A + S_Madiga-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 5 52.3878 1,908.8
S_Uygur-2B + S_Chane-1A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 5 52.3878 1,908.8
S_Uygur-2B + S_North_Ossetian-2B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 4 52.3878 1,527.1
S_Uygur-2B + S_Even-3A Discordant SGDP 31,794,828 – 31,868,351 73,523.0 0.00557717 3 36.2910 1,653.3
S_Uygur-2B + S_Yakut-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 10 146.4030 1,366.1
S_Uygur-2B + S_Mongola-1B Discordant SGDP 31,727,319 – 31,794,897 67,578.0 0.00252339 4 33.4374 2,392.5
S_Uygur-2B + S_Quechua-1A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 5 52.3878 1,908.8
S_Uygur-2B + S_Quechua-3A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 13 146.4030 1,775.9
S_Uygur-2B + S_Mixe-3A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Mixe-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 4 52.3878 1,527.1
S_Uygur-2B + S_Tuscan-2A Discordant SGDP 31,073,594 – 31,868,351 794,757.0 0.32785192 64 382.4834 3,346.6
S_Uygur-2B + S_Orcadian-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 6 52.3878 2,290.6
S_Uygur-2B + S_Yakut-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Yemenite_Jew-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Tlingit-1A Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 42 426.5092 1,969.5
S_Uygur-2B + S_Karitiana-2A Discordant SGDP 31,687,839 – 32,451,906 764,066.5 0.48680698 45 367.7519 2,447.3
S_Uygur-2B + S_Aleut-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Estonian-2A + S_Finnish-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Naxi-2B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 13 146.4030 1,775.9
S_Uygur-2B + S_Saami-2A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 10 146.4030 1,366.1
S_Uygur-2B + S_Naxi-3A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Iraqi_Jew-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 15 185.2250 1,619.7
S_Uygur-2B + S_Tu-2A Discordant SGDP 31,794,828 – 31,795,978 1,149.5 0.00020745 2 1.5518 25,777.2
S_Uygur-2B + S_Palestinian-1B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 5 52.3878 1,908.8
S_Uygur-2B + S_Uygur-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Bergamo-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Yi-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Jordanian-2B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 6 52.3878 2,290.6
S_Uygur-2B + S_She-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Abkhasian-2B Discordant SGDP 31,073,594 – 31,794,897 721,303.0 0.32228073 74 347.2254 4,262.4
S_Uygur-2B + S_Korean-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Turkish-2B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 12 146.4030 1,639.3
S_Uygur-2B + S_Korean-1A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 13 185.2250 1,403.7
S_Uygur-2B + B_French-3A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 11 146.4030 1,502.7
S_Uygur-2B + S_Burmese-2A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 12 185.2250 1,295.7
S_Uygur-2B + S_Surui-2A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 12 185.2250 1,295.7
S_Uygur-2B + S_Burmese-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Pima-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 12 185.2250 1,295.7
S_Uygur-2B + S_Thai-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Estonian-2A + S_Czech-2B Discordant SGDP 31,697,077 – 31,841,841 144,764.5 0.00639662 4 70.4870 1,135.0
S_Uygur-2B + S_Thai-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 13 185.2250 1,403.7
S_Estonian-2A + B_French-3B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Maori-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Saami-1B Discordant SGDP 31,794,828 – 32,451,906 657,077.5 0.48336143 46 316.3972 2,907.7
S_Uygur-2B + S_Bougainville-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Icelandic-1A Discordant SGDP 31,575,111 – 31,868,351 293,240.5 0.01288349 12 141.7554 1,693.1
S_Uygur-2B + S_Igorot-1A Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 59 426.5092 2,766.6
S_Uygur-2B + S_Iraqi_Jew-2A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 5 52.3878 1,908.8
S_Uygur-2B + S_Hawaiian-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Iraqi_Jew-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Chukchi-1A Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 4 52.3878 1,527.1
S_Uygur-2B + S_Palestinian-2B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 17 146.4030 2,322.4
S_Uygur-2B + S_Chukchi-1B Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 4 47.9538 1,668.3
S_Uygur-2B + S_BedouinB-2A Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 16 185.2250 1,727.6
S_Uygur-2B + S_Eskimo_Naukan-1B Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 4 47.9538 1,668.3
S_Uygur-2B + S_Bergamo-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 11 146.4030 1,502.7
S_Uygur-2B + S_Eskimo_Naukan-2A Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 4 47.9538 1,668.3
S_Uygur-2B + S_Sardinian-1B Discordant SGDP 31,134,695 – 31,841,841 707,146.0 0.24835638 65 340.4301 3,818.7
S_Uygur-2B + S_Mala-3A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Jordanian-2A Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 3 47.9538 1,251.2
S_Uygur-2B + S_Madiga-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Jordanian-1A Discordant SGDP 31,484,549 – 32,451,906 967,356.5 0.51017773 42 465.3311 1,805.2
S_Uygur-2B + S_Makrani-1B Discordant SGDP 31,565,428 – 32,451,906 886,477.5 0.49145516 47 426.5092 2,203.9
S_Uygur-2B + S_Russian-2B Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 8 129.1814 1,238.6
S_Uygur-2B + S_Pathan-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_North_Ossetian-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 9 146.4030 1,229.5
S_Uygur-2B + S_Brahui-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 14 146.4030 1,912.5
S_Uygur-2B + S_Spanish-1A Discordant SGDP 31,601,307 – 31,795,978 194,671.0 0.00595989 7 94.4421 1,482.4
S_Uygur-2B + S_Burusho-1A Discordant SGDP 31,687,839 – 32,451,906 764,066.5 0.48680698 44 367.7519 2,392.9
S_Uygur-2B + S_Turkish-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 12 146.4030 1,639.3
S_Uygur-2B + S_Burusho-2B Discordant SGDP 31,565,428 – 31,841,841 276,413.0 0.01149221 12 133.6782 1,795.4
S_Uygur-2B + S_Yemenite_Jew-1B Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 69 353.1549 3,907.6
S_Uygur-2B + S_Hazara-1B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 4 52.3878 1,527.1
S_Uygur-2B + B_Mixe-1B Discordant SGDP 31,697,077 – 31,794,897 97,820.5 0.00300411 4 47.9538 1,668.3
S_Uygur-2B + S_Sindhi-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 9 146.4030 1,229.5
S_Uygur-2B + S_Surui-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Sindhi-1B Discordant SGDP 31,697,077 – 32,451,906 754,829.0 0.48635957 46 363.3179 2,532.2
S_Uygur-2B + S_Surui-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 12 185.2250 1,295.7
S_Uygur-2B + S_Sindhi-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Piapoco-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Punjabi-1B Discordant SGDP 31,687,839 – 31,794,897 107,058.0 0.00345152 5 52.3878 1,908.8
S_Estonian-2A + S_Ulchi-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Armenian-2B Discordant SGDP 31,484,549 – 31,868,351 383,802.0 0.03239346 13 185.2250 1,403.7
S_Estonian-2A + S_Kalash-2A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Bulgarian-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 13 146.4030 1,775.9
S_Estonian-2A + S_English-2B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Luhya-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Estonian-2A + S_Polish-1A Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Czech-2B Discordant SGDP 31,601,307 – 32,501,510 900,203.5 0.62948963 50 433.0977 2,308.9
S_Estonian-2A + S_Karitiana-1B Discordant SGDP 31,794,828 – 31,794,897 69.0 0.00000598 2 1.0331 38,717.7
S_Uygur-2B + S_Saami-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 8 146.4030 1,092.9
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

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