HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs367705534
Alleles:
reference
C
ancestral
alternate
T
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 10   position  31,806,325  (GRCh37) Explore rs367705534 on Ensembl!
Allele frequency in   SGDP ⇪
Sample 98.7%
1.3%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 100.0%
0.0%
OCN 86.0%
14.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Joint clock
Data source Estimated age of T allele # pairs = concordant + discordant Quality score
    Genomes in SGDP674.1 generations 112  =  14  +  980.929
Pairwise results table Joint clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Papuan-14A + S_Papuan-9B Concordant SGDP 31,408,993 – 31,906,050 497,057.0 0.28818079 6 470.1320 255.2
S_Papuan-4B + S_Papuan-9B Concordant SGDP 31,444,582 – 31,906,050 461,467.5 0.25909792 11 429.7827 511.9
S_Papuan-4B + S_Papuan-12B Concordant SGDP 31,416,601 – 31,981,558 564,957.0 0.41226144 17 601.9885 564.8
S_Papuan-4B + S_Papuan-14A Concordant SGDP 31,444,582 – 31,981,558 536,975.5 0.39243411 15 572.6955 523.8
S_Papuan-4B + S_Papuan-9A Concordant SGDP 31,132,895 – 31,981,558 848,663.0 0.52398097 32 827.5430 773.4
S_Papuan-4A + S_Papuan-9B Concordant SGDP 31,444,582 – 31,906,050 461,467.5 0.25909792 6 429.7827 279.2
S_Papuan-4B + S_Papuan-4A Concordant SGDP 31,132,895 – 31,981,558 848,663.0 0.52398097 30 827.5430 725.0
S_Papuan-4A + S_Papuan-9A Concordant SGDP 31,077,511 – 31,989,209 911,698.0 0.59320754 24 913.1811 525.6
S_Papuan-10A + S_Papuan-12B Concordant SGDP 31,480,954 – 32,453,881 972,926.5 0.57426084 14 927.4134 301.9
S_Papuan-10A + S_Papuan-9A Concordant SGDP 31,480,954 – 31,989,209 508,255.0 0.31457836 5 496.6251 201.4
S_Papuan-14A + S_Papuan-12B Concordant SGDP 31,444,802 – 31,989,209 544,407.5 0.41225776 9 592.1218 304.0
S_Papuan-9A + S_Papuan-12B Concordant SGDP 31,444,802 – 31,989,209 544,407.5 0.41225776 8 592.1218 270.2
S_Papuan-10A + S_Papuan-4A Concordant SGDP 31,480,954 – 32,420,434 939,479.5 0.50793718 20 858.2999 466.0
S_Papuan-10A + S_Papuan-14A Concordant SGDP 31,480,954 – 31,989,209 508,255.0 0.31457836 6 496.6251 241.6
S_Papuan-9B + S_Palestinian-2B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Finnish-1B Discordant SGDP 31,806,307 – 31,868,351 62,044.5 0.00476095 6 34.5901 3,469.2
S_Papuan-9B + S_Bulgarian-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9B + S_Madiga-1A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Dusun-1A Discordant SGDP 31,727,319 – 31,868,351 141,032.0 0.00809458 6 75.1710 1,596.4
S_Papuan-9B + S_Burmese-1A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9B + S_Uygur-1B Discordant SGDP 31,134,695 – 31,841,841 707,146.0 0.24835638 60 539.1152 2,225.9
S_Papuan-9B + S_Aleut-2B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9B + S_Tubalar-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + B_Dai-4A Discordant SGDP 31,806,307 – 31,827,533 21,226.5 0.00154497 4 12.4247 6,438.8
S_Papuan-9A + S_Iraqi_Jew-1B Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 8 157.3398 1,016.9
S_Papuan-9B + S_Orcadian-2B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-12B + S_Maori-1B Discordant SGDP 31,687,839 – 32,048,924 361,084.5 0.34027996 21 446.5445 940.6
S_Papuan-10A + S_Papuan-12A Discordant SGDP 31,134,695 – 32,370,637 1,235,942.0 0.69441234 43 1,149.7820 748.0
S_Papuan-9A + S_Basque-2B Discordant SGDP 31,727,319 – 31,841,841 114,522.0 0.00591590 7 60.7033 2,306.3
S_Papuan-10A + S_Georgian-2B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9A + S_Bergamo-2B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-10A + S_Greek-2B Discordant SGDP 31,433,818 – 32,048,924 615,105.5 0.47953680 31 679.8801 911.9
S_Papuan-9A + S_Piapoco-2A Discordant SGDP 31,806,307 – 31,820,336 14,029.5 0.00035502 4 8.0182 9,977.3
S_Papuan-4A + S_Bougainville-1A Discordant SGDP 31,565,428 – 31,983,119 417,690.5 0.26588415 17 414.1988 820.9
S_Papuan-9B + S_Even-3B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-4A + S_Mansi-2A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Tu-2B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-4A + S_Kalash-1B Discordant SGDP 31,806,307 – 32,043,090 236,783.5 0.32604496 18 375.4920 958.7
S_Papuan-9B + S_Uygur-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-4A + B_Papuan-15B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 11 147.3302 1,493.2
S_Papuan-9B + S_Kinh-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-4B + S_Tubalar-1B Discordant SGDP 31,583,614 – 32,452,204 868,590.0 0.49429173 40 813.3566 983.6
S_Papuan-9B + S_Irula-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-4B + S_Polish-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9B + S_Kalash-2A Discordant SGDP 31,806,307 – 31,820,336 14,029.5 0.00035502 4 8.0182 9,977.3
S_Papuan-14A + S_Papuan-3B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 9 147.3302 1,221.7
S_Papuan-9B + S_Atayal-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-14A + S_Papuan-5B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-9B + S_French-2B Discordant SGDP 31,806,307 – 31,827,533 21,226.5 0.00154497 4 12.4247 6,438.8
S_Papuan-14A + S_Papuan-2B Discordant SGDP 31,575,111 – 31,868,351 293,240.5 0.01288349 15 152.0622 1,972.9
S_Papuan-9B + S_Bergamo-2A Discordant SGDP 31,806,307 – 31,868,351 62,044.5 0.00476095 6 34.5901 3,469.2
S_Papuan-14A + S_Sardinian-1A Discordant SGDP 31,806,307 – 32,451,906 645,599.0 0.48254522 35 696.9237 1,004.4
S_Papuan-9B + S_Karitiana-1A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-9A + S_Ulchi-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-12B + S_Papuan-7B Discordant SGDP 31,583,614 – 32,420,230 836,616.0 0.47448293 39 782.1620 997.2
S_Papuan-9A + S_Ulchi-1A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Estonian-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Yakut-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Iraqi_Jew-2B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Even-1A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Palestinian-3A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 9 157.3398 1,144.0
S_Papuan-9A + S_Naxi-3B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Jordanian-1A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Han-1A Discordant SGDP 31,697,077 – 31,868,351 171,274.5 0.00857530 6 90.0720 1,332.3
S_Papuan-9A + S_Chane-1B Discordant SGDP 31,806,307 – 31,820,336 14,029.5 0.00035502 4 8.0182 9,977.3
S_Papuan-9A + S_Yi-1B Discordant SGDP 31,575,111 – 31,868,351 293,240.5 0.01288349 14 152.0622 1,841.4
S_Papuan-9B + S_Quechua-1B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9A + S_Korean-2A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Altaian-1B Discordant SGDP 31,134,695 – 31,841,841 707,146.0 0.24835638 69 539.1152 2,559.7
S_Papuan-9A + S_Ami-2A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Even-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-9A + S_Thai-1A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Miao-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-9A + S_Kinh-2B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Uygur-1A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-9A + S_Maori-1B Discordant SGDP 31,134,695 – 31,989,209 854,514.0 0.52025224 46 827.3685 1,112.0
S_Papuan-9B + S_Yi-2B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Chukchi-1A Discordant SGDP 31,806,307 – 31,827,533 21,226.5 0.00154497 4 12.4247 6,438.8
S_Papuan-9B + S_She-2A Discordant SGDP 31,806,307 – 31,824,938 18,631.0 0.00076896 4 10.5581 7,577.2
S_Papuan-9A + S_Itelman-1A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 12 157.3398 1,525.4
S_Papuan-9B + S_Thai-1A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9A + S_Bengali-2A Discordant SGDP 31,806,307 – 31,868,351 62,044.5 0.00476095 6 34.5901 3,469.2
S_Papuan-9B + B_Australian-3A Discordant SGDP 31,565,428 – 31,841,841 276,413.0 0.01149221 16 142.8720 2,239.8
S_Papuan-9A + S_Bengali-2B Discordant SGDP 31,806,307 – 31,824,938 18,631.0 0.00076896 4 10.5581 7,577.2
S_Papuan-9B + S_Papuan-14B Discordant SGDP 31,806,307 – 31,824,938 18,631.0 0.00076896 4 10.5581 7,577.2
S_Papuan-9A + S_Kapu-1B Discordant SGDP 31,687,839 – 31,841,841 154,002.0 0.00684403 8 80.3962 1,990.1
S_Papuan-9B + S_Mala-2A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 14 157.3398 1,779.6
S_Papuan-9A + S_Relli-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9B + S_Pathan-1B Discordant SGDP 31,806,307 – 31,868,351 62,044.5 0.00476095 6 34.5901 3,469.2
S_Papuan-9A + S_Yadava-2B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9B + S_Albanian-1B Discordant SGDP 31,806,307 – 31,868,351 62,044.5 0.00476095 6 34.5901 3,469.2
S_Papuan-9A + S_Irula-2B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9B + S_Luhya-1B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9A + S_Mala-3B Discordant SGDP 31,687,839 – 31,841,841 154,002.0 0.00684403 8 80.3962 1,990.1
S_Papuan-9B + S_Finnish-2B Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9A + S_Brahmin-1A Discordant SGDP 31,575,111 – 31,841,841 266,730.5 0.01070481 9 137.5945 1,308.2
S_Papuan-9B + S_Saami-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Madiga-2B Discordant SGDP 31,806,307 – 31,868,351 62,044.5 0.00476095 5 34.5901 2,891.0
S_Papuan-9B + S_Druze-1B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 13 147.3302 1,764.7
S_Papuan-9A + S_Kusunda-2B Discordant SGDP 31,727,319 – 31,827,533 100,214.0 0.00487860 6 53.0056 2,263.9
S_Papuan-9B + S_Palestinian-1B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9A + S_Pathan-2B Discordant SGDP 31,806,307 – 31,824,938 18,631.0 0.00076896 4 10.5581 7,577.2
S_Papuan-9B + S_Jordanian-2B Discordant SGDP 31,806,307 – 31,820,336 14,029.5 0.00035502 4 8.0182 9,977.3
S_Papuan-9A + S_Kalash-2B Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-9B + B_French-3A Discordant SGDP 31,806,307 – 31,820,336 14,029.5 0.00035502 4 8.0182 9,977.3
S_Papuan-9A + S_Sindhi-2A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 5 20.1224 4,969.6
S_Papuan-9B + S_Pima-2A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-9A + S_Abkhasian-1A Discordant SGDP 31,806,307 – 31,841,841 35,534.5 0.00258227 4 20.1224 3,975.7
S_Papuan-12B + S_Papuan-1B Discordant SGDP 31,583,614 – 32,420,230 836,616.0 0.47448293 40 782.1620 1,022.8
S_Papuan-9A + S_Czech-2A Discordant SGDP 31,806,307 – 31,806,326 19.5 0.00000004 4 1.0094 79,255.6
S_Papuan-12B + S_Finnish-1B Discordant SGDP 31,806,307 – 31,868,351 62,044.5 0.00476095 6 34.5901 3,469.2
S_Papuan-9A + S_English-2A Discordant SGDP 31,806,307 – 31,820,336 14,029.5 0.00035502 4 8.0182 9,977.3
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2026 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.