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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs755264033
Alleles:
reference
C
ancestral
alternate
T
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Allele frequency in   SGDP
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 100.0%
0.0%
OCN 100.0%
0.0%
SAS 97.4%
2.6%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Age estimation summary Mutation clock
Data source Estimated age of T allele # pairs = concordant + discordant Quality score
 Genomes in SGDP898.5 generations 93  =  1  +  921.000
Pairwise results table Mutation clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Kusunda-1B + S_Kusunda-2A Concordant SGDP 135,238,965136,600,964 1,361,999.0 0.53532770 24 654.7595 733.1
S_Kusunda-2A + S_Armenian-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 14 109.5424 2,556.1
S_Kusunda-2A + S_Punjabi-4A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 14 109.5424 2,556.1
S_Kusunda-2A + S_Kusunda-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 10 109.5424 1,825.8
S_Kusunda-2A + S_Kapu-2B Discordant SGDP 135,760,398136,762,052 1,001,654.0 0.08787732 42 481.7939 1,743.5
S_Kusunda-2A + S_Piapoco-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Tajik-2A Discordant SGDP 136,559,711136,739,216 179,505.0 0.02064488 10 87.1624 2,294.6
S_Kusunda-2A + S_BedouinB-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 17 109.5424 3,103.8
S_Kusunda-1B + S_Finnish-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_Estonian-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_English-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_Burusho-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_Chukchi-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_Dusun-2A Discordant SGDP 136,587,193136,774,712 187,518.5 0.02388569 27 91.0089 5,933.5
S_Kusunda-2A + S_Finnish-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 14 109.5424 2,556.1
S_Kusunda-2A + S_Samaritan-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_Saami-1A Discordant SGDP 136,559,711136,590,652 30,941.5 0.00397147 3 15.8519 3,785.0
S_Kusunda-2A + S_Russian-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 13 109.5424 2,373.5
S_Kusunda-1B + S_Icelandic-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + B_Sardinian-3B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_Luo-1B Discordant SGDP 136,389,749136,587,238 197,489.0 0.03499971 53 95.7947 11,065.3
S_Kusunda-2A + S_Pima-2B Discordant SGDP 136,587,193136,785,841 198,647.5 0.03365101 11 96.3508 2,283.3
S_Kusunda-1B + S_Tuscan-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Somali-1A Discordant SGDP 136,559,711136,587,238 27,527.0 0.00286583 6 14.2130 8,443.0
S_Kusunda-1B + S_Orcadian-2A Discordant SGDP 136,559,711136,590,652 30,941.5 0.00397147 3 15.8519 3,785.0
S_Kusunda-2A + S_Kalash-2A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 18 109.5424 3,286.4
S_Kusunda-1B + S_Lezgin-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Abkhasian-1B Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 14 98.1237 2,853.5
S_Kusunda-1B + S_Esan-1A Discordant SGDP 136,389,749136,587,238 197,489.0 0.03499971 57 95.7947 11,900.4
S_Kusunda-2A + S_Bulgarian-2A Discordant SGDP 136,559,711136,784,130 224,419.0 0.03356244 16 108.7211 2,943.3
S_Kusunda-1B + S_Saharawi-2A Discordant SGDP 136,559,711136,590,652 30,941.5 0.00397147 4 15.8519 5,046.7
S_Kusunda-2A + S_Hungarian-2B Discordant SGDP 136,563,445136,762,052 198,607.0 0.02158089 15 96.3314 3,114.3
S_Kusunda-2A + S_Zapotec-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Palestinian-1A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 11 98.1237 2,242.1
S_Kusunda-2A + S_Mixe-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Jordanian-3A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Mixtec-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Adygei-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Zapotec-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + B_Dai-4A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 13 109.5424 2,373.5
S_Kusunda-2A + S_Quechua-3A Discordant SGDP 136,559,711136,884,053 324,342.0 0.23453895 17 156.6842 2,170.0
S_Kusunda-2A + S_Saharawi-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Yakut-1B Discordant SGDP 136,559,711136,781,557 221,846.5 0.03149963 15 107.4863 2,791.1
S_Kusunda-2A + S_Pima-1A Discordant SGDP 136,587,193136,785,841 198,647.5 0.03365101 10 96.3508 2,075.7
S_Kusunda-2A + S_Tubalar-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-1B + S_Uygur-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Ulchi-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 12 109.5424 2,190.9
S_Kusunda-2A + S_Irula-1B Discordant SGDP 135,760,398136,785,841 1,025,443.0 0.10255580 35 493.2126 1,419.3
S_Kusunda-2A + S_Aleut-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 15 109.5424 2,738.7
S_Kusunda-2A + S_Madiga-2A Discordant SGDP 136,559,711136,654,786 95,075.0 0.01846545 10 46.6360 4,288.5
S_Kusunda-2A + S_Aleut-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 11 109.5424 2,008.4
S_Kusunda-2A + S_Kalash-1A Discordant SGDP 136,587,193136,590,087 2,894.0 0.00094422 2 2.3891 16,742.6
S_Kusunda-2A + S_Eskimo_Sireniki-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 12 109.5424 2,190.9
S_Kusunda-2A + S_Punjabi-3A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 14 109.5424 2,556.1
S_Kusunda-2A + S_Even-3A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Punjabi-1B Discordant SGDP 135,760,398136,762,052 1,001,654.0 0.08787732 168 481.7939 6,973.9
S_Kusunda-2A + S_Eskimo_Chaplin-1A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 12 98.1237 2,445.9
S_Kusunda-2A + S_Armenian-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 14 109.5424 2,556.1
S_Kusunda-2A + S_Mansi-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Bulgarian-1B Discordant SGDP 136,563,445136,762,052 198,607.0 0.02158089 13 96.3314 2,699.0
S_Kusunda-2A + S_Even-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Saharawi-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Cambodian-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Hungarian-2A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 10 109.5424 1,825.8
S_Kusunda-2A + S_Naxi-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Iranian-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 13 109.5424 2,373.5
S_Kusunda-2A + S_Han-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Druze-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Tu-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_BedouinB-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 17 109.5424 3,103.8
S_Kusunda-2A + S_Oroqen-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Sardinian-1A Discordant SGDP 136,563,445136,784,130 220,685.0 0.03331764 15 106.9288 2,805.6
S_Kusunda-2A + S_Oroqen-2A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 16 98.1237 3,261.2
S_Kusunda-2A + S_Jordanian-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 17 109.5424 3,103.8
S_Kusunda-2A + S_Hezhen-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_North_Ossetian-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Dai-2A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 14 109.5424 2,556.1
S_Kusunda-2A + S_Spanish-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Xibo-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Yemenite_Jew-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Thai-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + B_Sardinian-3A Discordant SGDP 136,559,711136,784,130 224,419.0 0.03356244 12 108.7211 2,207.5
S_Kusunda-2A + S_Papuan-14A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + B_Karitiana-3B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Itelman-1A Discordant SGDP 136,587,193136,785,841 198,647.5 0.03365101 11 96.3508 2,283.3
S_Kusunda-2A + S_Chane-1A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 15 98.1237 3,057.4
S_Kusunda-2A + S_Eskimo_Naukan-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 13 109.5424 2,373.5
S_Kusunda-2A + S_Piapoco-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 15 109.5424 2,738.7
S_Kusunda-2A + S_Mansi-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Pima-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 2 1.0214 39,163.5
S_Kusunda-2A + S_Bengali-1B Discordant SGDP 135,796,204136,699,343 903,139.0 0.07625547 40 434.5067 1,841.2
S_Kusunda-2A + S_Mayan-1B Discordant SGDP 136,559,711136,884,053 324,342.0 0.23453895 20 156.6842 2,552.9
S_Kusunda-2A + S_Kapu-1B Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 15 98.1237 3,057.4
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.