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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs755264033
Alleles:
reference
C
ancestral
alternate
T
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Allele frequency in   SGDP
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 100.0%
0.0%
EAS 100.0%
0.0%
OCN 100.0%
0.0%
SAS 97.4%
2.6%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Age estimation summary Recombination clock
Data source Estimated age of T allele # pairs = concordant + discordant Quality score
 Genomes in SGDP145.9 generations 93  =  1  +  921.000
Pairwise results table Recombination clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Kusunda-1B + S_Kusunda-2A Concordant SGDP 135,238,965136,600,964 1,361,999.0 0.53532770 3 429.2622 139.8
S_Kusunda-2A + S_Armenian-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Punjabi-4A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Kusunda-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Kapu-2B Discordant SGDP 135,760,398136,762,052 1,001,654.0 0.08787732 3 71.3019 841.5
S_Kusunda-2A + S_Piapoco-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Tajik-2A Discordant SGDP 136,559,711136,739,216 179,505.0 0.02064488 3 17.5159 3,425.5
S_Kusunda-2A + S_BedouinB-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-1B + S_Finnish-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_Estonian-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_English-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_Burusho-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_Chukchi-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_Dusun-2A Discordant SGDP 136,587,193136,774,712 187,518.5 0.02388569 3 20.1086 2,983.8
S_Kusunda-2A + S_Finnish-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Samaritan-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_Saami-1A Discordant SGDP 136,559,711136,590,652 30,941.5 0.00397147 3 4.1772 14,363.8
S_Kusunda-2A + S_Russian-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-1B + S_Icelandic-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + B_Sardinian-3B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_Luo-1B Discordant SGDP 136,389,749136,587,238 197,489.0 0.03499971 3 28.9998 2,069.0
S_Kusunda-2A + S_Pima-2B Discordant SGDP 136,587,193136,785,841 198,647.5 0.03365101 3 27.9208 2,148.9
S_Kusunda-1B + S_Tuscan-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Somali-1A Discordant SGDP 136,559,711136,587,238 27,527.0 0.00286583 3 3.2927 18,222.3
S_Kusunda-1B + S_Orcadian-2A Discordant SGDP 136,559,711136,590,652 30,941.5 0.00397147 3 4.1772 14,363.8
S_Kusunda-2A + S_Kalash-2A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-1B + S_Lezgin-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Abkhasian-1B Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 3 18.4606 3,250.2
S_Kusunda-1B + S_Esan-1A Discordant SGDP 136,389,749136,587,238 197,489.0 0.03499971 3 28.9998 2,069.0
S_Kusunda-2A + S_Bulgarian-2A Discordant SGDP 136,559,711136,784,130 224,419.0 0.03356244 3 27.8500 2,154.4
S_Kusunda-1B + S_Saharawi-2A Discordant SGDP 136,559,711136,590,652 30,941.5 0.00397147 3 4.1772 14,363.8
S_Kusunda-2A + S_Hungarian-2B Discordant SGDP 136,563,445136,762,052 198,607.0 0.02158089 3 18.2647 3,285.0
S_Kusunda-2A + S_Zapotec-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Palestinian-1A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 3 18.4606 3,250.2
S_Kusunda-2A + S_Mixe-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Jordanian-3A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Mixtec-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Adygei-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Zapotec-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + B_Dai-4A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Quechua-3A Discordant SGDP 136,559,711136,884,053 324,342.0 0.23453895 3 188.6312 318.1
S_Kusunda-2A + S_Saharawi-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Yakut-1B Discordant SGDP 136,559,711136,781,557 221,846.5 0.03149963 3 26.1997 2,290.1
S_Kusunda-2A + S_Pima-1A Discordant SGDP 136,587,193136,785,841 198,647.5 0.03365101 3 27.9208 2,148.9
S_Kusunda-2A + S_Tubalar-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-1B + S_Uygur-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Ulchi-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Irula-1B Discordant SGDP 135,760,398136,785,841 1,025,443.0 0.10255580 3 83.0446 722.5
S_Kusunda-2A + S_Aleut-1A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Madiga-2A Discordant SGDP 136,559,711136,654,786 95,075.0 0.01846545 3 15.7724 3,804.1
S_Kusunda-2A + S_Aleut-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Kalash-1A Discordant SGDP 136,587,193136,590,087 2,894.0 0.00094422 3 1.7554 34,180.7
S_Kusunda-2A + S_Eskimo_Sireniki-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Punjabi-3A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Even-3A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Punjabi-1B Discordant SGDP 135,760,398136,762,052 1,001,654.0 0.08787732 3 71.3019 841.5
S_Kusunda-2A + S_Eskimo_Chaplin-1A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 3 18.4606 3,250.2
S_Kusunda-2A + S_Armenian-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Mansi-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Bulgarian-1B Discordant SGDP 136,563,445136,762,052 198,607.0 0.02158089 3 18.2647 3,285.0
S_Kusunda-2A + S_Even-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Saharawi-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Cambodian-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Hungarian-2A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Naxi-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Iranian-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Han-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Druze-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Tu-2B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_BedouinB-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Oroqen-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Sardinian-1A Discordant SGDP 136,563,445136,784,130 220,685.0 0.03331764 3 27.6541 2,169.7
S_Kusunda-2A + S_Oroqen-2A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 3 18.4606 3,250.2
S_Kusunda-2A + S_Jordanian-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Hezhen-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_North_Ossetian-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Dai-2A Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Spanish-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Xibo-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Yemenite_Jew-1A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Thai-1B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + B_Sardinian-3A Discordant SGDP 136,559,711136,784,130 224,419.0 0.03356244 3 27.8500 2,154.4
S_Kusunda-2A + S_Papuan-14A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + B_Karitiana-3B Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Itelman-1A Discordant SGDP 136,587,193136,785,841 198,647.5 0.03365101 3 27.9208 2,148.9
S_Kusunda-2A + S_Chane-1A Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 3 18.4606 3,250.2
S_Kusunda-2A + S_Eskimo_Naukan-2B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Piapoco-1B Discordant SGDP 136,559,711136,785,841 226,130.0 0.03650418 3 30.2033 1,986.5
S_Kusunda-2A + S_Mansi-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Pima-2A Discordant SGDP 136,587,193136,587,238 44.5 0.00001267 3 1.0101 59,398.2
S_Kusunda-2A + S_Bengali-1B Discordant SGDP 135,796,204136,699,343 903,139.0 0.07625547 3 62.0044 967.7
S_Kusunda-2A + S_Mayan-1B Discordant SGDP 136,559,711136,884,053 324,342.0 0.23453895 3 188.6312 318.1
S_Kusunda-2A + S_Kapu-1B Discordant SGDP 136,559,711136,762,052 202,341.0 0.02182570 3 18.4606 3,250.2
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.