Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs887394772
Alleles:
reference
Aancestral
alternate
Gderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 
Explore
2
position 136,595,635 (GRCh37)
Explore rs887394772 on Ensembl!
Allele frequency in SGDP ⇪
| Sample | 99.5% |
0.5% |
|
AFR |
100.0% |
0.0% |
|
AMR |
100.0% |
0.0% |
|
CAS |
94.4% |
5.6% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
| reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
| Data source | Estimated age of G allele |
# pairs = concordant + discordant | Quality score |
|---|---|---|---|
| Genomes in SGDP | 463.5 generations | 97 = 3 + 94 | 1.000 |
Pairwise results table
| Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
|---|---|---|---|---|---|---|---|---|
| S_Aleut-2A + S_Eskimo_Naukan-2B | Concordant | SGDP | 135,757,046 – 136,788,485 |
1,031,439.5 |
0.17616815 |
8 | 496.0910 | 322.5 |
| S_Aleut-1A + S_Eskimo_Naukan-2B | Concordant | SGDP | 135,281,060 – 137,854,344 |
2,573,284.0 |
1.63693942 |
20 | 1,236.1763 | 323.6 |
| S_Aleut-1A + S_Aleut-2A | Concordant | SGDP | 135,757,046 – 136,788,485 |
1,031,439.5 |
0.17616815 |
8 | 496.0910 | 322.5 |
| S_Eskimo_Naukan-2B + S_Mansi-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Oroqen-1B | Discordant | SGDP | 136,595,629 – 136,785,841 |
190,211.5 |
0.03222743 |
6 | 92.3015 | 1,300.1 |
| S_Eskimo_Naukan-2B + S_Yi-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Pima-1B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Eskimo_Chaplin-1A | Discordant | SGDP | 136,549,528 – 136,762,052 |
212,524.0 |
0.02737236 |
12 | 103.0115 | 2,329.8 |
| S_Eskimo_Naukan-2B + S_Palestinian-1A | Discordant | SGDP | 136,544,266 – 136,762,052 |
217,786.0 |
0.02797987 |
9 | 105.5373 | 1,705.6 |
| S_Eskimo_Naukan-2B + S_Lezgin-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Dai-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Xibo-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Cambodian-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Han-1B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Even-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Ulchi-1A | Discordant | SGDP | 136,493,766 – 136,785,841 |
292,075.0 |
0.04838542 |
6 | 141.1960 | 849.9 |
| S_Aleut-1A + S_Yakut-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Burusho-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Papuan-14B | Discordant | SGDP | 136,544,266 – 136,785,841 |
241,575.0 |
0.04265835 |
9 | 116.9560 | 1,539.0 |
| S_Eskimo_Naukan-2B + S_Hungarian-2B | Discordant | SGDP | 136,555,141 – 136,762,052 |
206,910.5 |
0.02601890 |
11 | 100.3170 | 2,193.0 |
| S_Aleut-1A + S_Eskimo_Naukan-2A | Discordant | SGDP | 136,590,087 – 137,849,955 |
1,259,868.0 |
1.13825955 |
75 | 605.7366 | 2,476.3 |
| S_Eskimo_Naukan-2B + S_Tuscan-1A | Discordant | SGDP | 135,760,098 – 136,762,052 |
1,001,954.0 |
0.08851659 |
67 | 481.9379 | 2,780.4 |
| S_Aleut-1A + S_Relli-2B | Discordant | SGDP | 135,760,098 – 136,595,663 |
835,565.0 |
0.07096959 |
62 | 402.0712 | 3,084.0 |
| S_Eskimo_Naukan-2B + B_Papuan-15B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Madiga-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Mixtec-2B | Discordant | SGDP | 136,389,749 – 136,785,841 |
396,092.0 |
0.06863806 |
15 | 191.1242 | 1,569.7 |
| S_Aleut-1A + S_Kalash-1B | Discordant | SGDP | 136,389,749 – 136,762,052 |
372,303.0 |
0.05395958 |
18 | 179.7054 | 2,003.3 |
| S_Eskimo_Naukan-2B + S_Naxi-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Burusho-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Uygur-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Punjabi-4B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Dusun-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Armenian-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Somali-1B | Discordant | SGDP | 136,590,087 – 136,785,841 |
195,753.5 |
0.03270679 |
15 | 94.9617 | 3,159.2 |
| S_Aleut-1A + S_Bulgarian-2A | Discordant | SGDP | 136,556,402 – 136,784,130 |
227,728.0 |
0.03533949 |
10 | 110.3094 | 1,813.1 |
| S_Eskimo_Naukan-2B + S_Armenian-1A | Discordant | SGDP | 136,389,749 – 136,654,786 |
265,037.0 |
0.05059933 |
14 | 128.2178 | 2,183.8 |
| S_Aleut-1A + S_Finnish-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Samaritan-1B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Icelandic-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_BedouinB-2B | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
31 | 339.5063 | 1,826.2 |
| S_Aleut-1A + S_BedouinB-1B | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
29 | 339.5063 | 1,708.4 |
| S_Eskimo_Naukan-2B + S_Jordanian-2B | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
31 | 339.5063 | 1,826.2 |
| S_Aleut-2A + S_Surui-1B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Tajik-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Tubalar-1B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Chane-1A | Discordant | SGDP | 136,544,266 – 136,762,052 |
217,786.0 |
0.02797987 |
11 | 105.5373 | 2,084.6 |
| S_Eskimo_Naukan-2B + S_Eskimo_Sireniki-1A | Discordant | SGDP | 136,595,629 – 136,785,841 |
190,211.5 |
0.03222743 |
5 | 92.3015 | 1,083.4 |
| S_Aleut-1A + S_Jordanian-2B | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
32 | 339.5063 | 1,885.1 |
| S_Aleut-1A + S_BantuHerero-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Mixe-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Russian-1A | Discordant | SGDP | 136,389,749 – 136,785,841 |
396,092.0 |
0.06863806 |
10 | 191.1242 | 1,046.4 |
| S_Eskimo_Naukan-2B + S_Aleut-1B | Discordant | SGDP | 136,389,749 – 137,032,995 |
643,246.0 |
0.39753830 |
24 | 309.7581 | 1,549.6 |
| S_Aleut-1A + S_Saharawi-1B | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
29 | 339.5063 | 1,708.4 |
| S_Eskimo_Naukan-2B + S_Even-3A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_North_Ossetian-1A | Discordant | SGDP | 135,760,098 – 136,699,343 |
939,245.5 |
0.08691353 |
64 | 451.8378 | 2,832.9 |
| S_Eskimo_Naukan-2B + S_Mansi-1B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Spanish-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Tu-2A | Discordant | SGDP | 136,556,402 – 136,785,841 |
229,439.0 |
0.03828123 |
12 | 111.1307 | 2,159.6 |
| S_Aleut-1A + S_Yemenite_Jew-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Oroqen-2A | Discordant | SGDP | 136,544,266 – 136,762,052 |
217,786.0 |
0.02797987 |
12 | 105.5373 | 2,274.1 |
| S_Aleut-1A + S_Saharawi-2A | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
27 | 339.5063 | 1,590.5 |
| S_Eskimo_Naukan-2B + S_Xibo-1B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-1A + S_Pima-1A | Discordant | SGDP | 136,590,087 – 136,785,841 |
195,753.5 |
0.03270679 |
5 | 94.9617 | 1,053.1 |
| S_Eskimo_Naukan-2B + S_Thai-1A | Discordant | SGDP | 136,544,266 – 136,785,841 |
241,575.0 |
0.04265835 |
8 | 116.9560 | 1,368.0 |
| S_Aleut-2A + S_Mixtec-2B | Discordant | SGDP | 136,389,749 – 136,785,841 |
396,092.0 |
0.06863806 |
13 | 191.1242 | 1,360.4 |
| S_Eskimo_Naukan-2B + S_Itelman-1A | Discordant | SGDP | 136,595,629 – 136,785,841 |
190,211.5 |
0.03222743 |
6 | 92.3015 | 1,300.1 |
| S_Aleut-2A + S_Ulchi-2A | Discordant | SGDP | 136,544,266 – 136,739,216 |
194,950.0 |
0.02679905 |
7 | 94.5760 | 1,480.3 |
| S_Eskimo_Naukan-2B + S_Mala-3B | Discordant | SGDP | 136,544,266 – 136,762,052 |
217,786.0 |
0.02797987 |
9 | 105.5373 | 1,705.6 |
| S_Aleut-2A + S_Ulchi-2B | Discordant | SGDP | 136,544,266 – 136,739,216 |
194,950.0 |
0.02679905 |
7 | 94.5760 | 1,480.3 |
| S_Eskimo_Naukan-2B + S_Kusunda-1A | Discordant | SGDP | 136,544,266 – 136,785,841 |
241,575.0 |
0.04265835 |
11 | 116.9560 | 1,881.0 |
| S_Aleut-2A + S_Even-2B | Discordant | SGDP | 136,590,087 – 136,785,841 |
195,753.5 |
0.03270679 |
5 | 94.9617 | 1,053.1 |
| S_Eskimo_Naukan-2B + S_Kalash-2B | Discordant | SGDP | 136,389,749 – 136,785,841 |
396,092.0 |
0.06863806 |
18 | 191.1242 | 1,883.6 |
| S_Aleut-2A + S_Miao-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_French-1B | Discordant | SGDP | 136,544,266 – 137,346,449 |
802,183.5 |
0.79293626 |
48 | 386.0481 | 2,486.7 |
| S_Aleut-2A + S_Japanese-2B | Discordant | SGDP | 136,544,266 – 136,762,052 |
217,786.0 |
0.02797987 |
14 | 105.5373 | 2,653.1 |
| S_Eskimo_Naukan-2B + S_Iranian-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-2A + S_Chukchi-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Druze-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-2A + S_Brahmin-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_BedouinB-1A | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
30 | 339.5063 | 1,767.3 |
| S_Aleut-2A + S_Madiga-1A | Discordant | SGDP | 136,595,629 – 136,762,052 |
166,422.5 |
0.01754895 |
14 | 80.8828 | 3,461.8 |
| S_Eskimo_Naukan-2B + S_Sardinian-1A | Discordant | SGDP | 136,555,141 – 136,784,130 |
228,988.5 |
0.03775564 |
11 | 110.9145 | 1,983.5 |
| S_Aleut-2A + S_Burusho-1A | Discordant | SGDP | 136,595,629 – 136,762,052 |
166,422.5 |
0.01754895 |
14 | 80.8828 | 3,461.8 |
| S_Eskimo_Naukan-2B + S_Jordanian-3B | Discordant | SGDP | 136,493,766 – 136,785,841 |
292,075.0 |
0.04838542 |
10 | 141.1960 | 1,416.5 |
| S_Aleut-2A + S_Punjabi-3B | Discordant | SGDP | 136,544,266 – 136,762,052 |
217,786.0 |
0.02797987 |
10 | 105.5373 | 1,895.1 |
| S_Eskimo_Naukan-2B + S_Orcadian-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-2A + S_Abkhasian-1B | Discordant | SGDP | 136,555,141 – 136,762,052 |
206,910.5 |
0.02601890 |
7 | 100.3170 | 1,395.6 |
| S_Eskimo_Naukan-2B + S_North_Ossetian-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-2A + S_Bulgarian-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + B_Dai-4A | Discordant | SGDP | 136,080,619 – 136,785,841 |
705,221.5 |
0.08319201 |
48 | 339.5063 | 2,827.6 |
| S_Aleut-2A + S_Atayal-1A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + B_Karitiana-3B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-2A + S_Yemenite_Jew-2B | Discordant | SGDP | 135,760,098 – 136,762,052 |
1,001,954.0 |
0.08851659 |
74 | 481.9379 | 3,070.9 |
| S_Eskimo_Naukan-2B + S_Piapoco-1B | Discordant | SGDP | 135,597,516 – 136,785,841 |
1,188,325.0 |
0.26173649 |
23 | 571.3960 | 805.0 |
| S_Aleut-2A + B_Crete-2B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Eskimo_Naukan-2B + S_Pima-2A | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
| S_Aleut-2A + B_Sardinian-3B | Discordant | SGDP | 136,595,629 – 136,595,663 |
33.5 |
0.00000195 |
2 | 1.0161 | 39,367.0 |
Data shown in this table can be downloaded from this page.
| α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
|---|
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