HumanGenomeDating
Atlas of Variant Age
Search
Examples: LCT, MCM6, EDAR, ZEB1
Shared Ancestry Database
TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
Watch movie
SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
Watch movie
Shared Ancestry Movies
About
Bulk downloads
Frequently Asked Questions
Citation
Download profile data
for this variant in csv format

Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs565518333
Alleles:
reference
T
ancestral
alternate
A
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 10   position  31,785,767  (GRCh37) Explore rs565518333 on Ensembl!
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 96.3%
3.7%
EAS 100.0%
0.0%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Mutation clock
Data source Estimated age of A allele # pairs = concordant + discordant Quality score
    Genomes in SGDP486.2 generations 99  =  1  +  981.000
Pairwise results table Mutation clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Tubalar-1B + S_Mansi-2B Concordant SGDP 31,374,847 – 31,983,119 608,271.5 0.45444956 6 292.9703 409.6
S_Tubalar-1B + B_French-3B Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 9 129.1814 1,393.4
S_Tubalar-1B + S_Jordanian-2B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Iraqi_Jew-1A Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Mansi-2B + S_Spanish-1A Discordant SGDP 31,687,839 – 31,785,796 97,957.0 0.00251094 5 48.0194 2,082.5
S_Mansi-2B + S_Icelandic-1B Discordant SGDP 31,687,839 – 32,277,373 589,533.5 0.43464838 68 283.9761 4,789.1
S_Mansi-2B + S_Kalash-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Papuan-10B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Ulchi-1B Discordant SGDP 31,112,961 – 31,795,978 683,016.5 0.28118483 31 328.8479 1,885.4
S_Tubalar-1B + S_Ulchi-2B Discordant SGDP 31,134,695 – 31,795,978 661,282.5 0.24516534 38 318.4156 2,386.8
S_Tubalar-1B + S_Altaian-1B Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Tubalar-1B + S_Tubalar-2A Discordant SGDP 31,040,456 – 31,785,796 745,340.5 0.37033092 46 358.7634 2,564.4
S_Tubalar-1B + S_Quechua-1A Discordant SGDP 31,134,695 – 31,785,796 651,101.0 0.24402329 50 313.5285 3,189.5
S_Tubalar-1B + S_Zapotec-2A Discordant SGDP 31,112,961 – 31,785,796 672,835.0 0.28004278 45 323.9608 2,778.1
S_Tubalar-1B + S_Piapoco-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Maori-1A Discordant SGDP 31,565,428 – 31,785,796 220,368.0 0.00715912 8 106.7766 1,498.5
S_Tubalar-1B + S_Even-3A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Papuan-12B Discordant SGDP 31,565,428 – 32,048,924 483,495.5 0.34492814 16 233.0778 1,372.9
S_Tubalar-1B + S_Yakut-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Georgian-2B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Naxi-3B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Orcadian-1B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Miao-1B Discordant SGDP 31,068,515 – 31,785,796 717,281.5 0.33399940 40 345.2951 2,316.9
S_Tubalar-1B + S_Mixtec-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Dai-3B Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Tubalar-1B + S_Bergamo-2B Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Tubalar-1B + S_Han-1B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Orcadian-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Tu-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Chane-1A Discordant SGDP 31,134,695 – 31,785,796 651,101.0 0.24402329 50 313.5285 3,189.5
S_Tubalar-1B + S_Uygur-1A Discordant SGDP 31,040,456 – 31,795,978 755,522.0 0.37147296 48 363.6506 2,639.9
S_Mansi-2B + S_Mozabite-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Yi-2B Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Mansi-2B + S_Papuan-1B Discordant SGDP 31,583,614 – 32,048,924 465,309.5 0.34332781 17 224.3486 1,515.5
S_Tubalar-1B + S_She-2A Discordant SGDP 31,041,075 – 31,795,978 754,902.5 0.36680613 58 363.3532 3,192.5
S_Mansi-2B + S_Papuan-7B Discordant SGDP 31,583,614 – 32,048,924 465,309.5 0.34332781 17 224.3486 1,515.5
S_Tubalar-1B + S_Tu-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Brahmin-1B Discordant SGDP 31,785,735 – 33,267,537 1,481,802.0 0.80756294 137 712.2650 3,846.9
S_Tubalar-1B + S_Korean-2B Discordant SGDP 31,687,839 – 31,785,796 97,957.0 0.00251094 5 48.0194 2,082.5
S_Mansi-2B + S_French-1A Discordant SGDP 31,565,428 – 31,785,796 220,368.0 0.00715912 8 106.7766 1,498.5
S_Tubalar-1B + S_Burmese-1B Discordant SGDP 31,040,456 – 31,795,978 755,522.0 0.37147296 50 363.6506 2,749.9
S_Mansi-2B + S_Greek-1A Discordant SGDP 31,144,556 – 31,868,351 723,795.0 0.24543891 37 348.4216 2,123.9
S_Tubalar-1B + S_Thai-1A Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Mansi-2B + S_Tuscan-2B Discordant SGDP 31,565,428 – 31,785,796 220,368.0 0.00715912 8 106.7766 1,498.5
S_Tubalar-1B + S_Kinh-2A Discordant SGDP 31,176,181 – 31,795,978 619,797.0 0.23319253 40 298.5026 2,680.0
S_Mansi-2B + S_Chechen-1B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Dusun-1B Discordant SGDP 31,575,111 – 31,795,978 220,867.0 0.00751377 8 107.0162 1,495.1
S_Mansi-2B + S_Turkish-2A Discordant SGDP 31,687,839 – 32,277,373 589,533.5 0.43464838 69 283.9761 4,859.6
S_Tubalar-1B + S_Maori-1B Discordant SGDP 31,601,307 – 31,983,119 381,812.0 0.26354286 20 184.2698 2,170.7
S_Tubalar-1B + S_Hungarian-2B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Papuan-3A Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Tubalar-1B + S_Bergamo-1A Discordant SGDP 31,112,961 – 31,785,796 672,835.0 0.28004278 43 323.9608 2,654.6
S_Tubalar-1B + S_Bougainville-1B Discordant SGDP 31,687,839 – 31,785,796 97,957.0 0.00251094 6 48.0194 2,499.0
S_Tubalar-1B + S_Sardinian-1B Discordant SGDP 31,687,839 – 31,785,796 97,957.0 0.00251094 5 48.0194 2,082.5
S_Tubalar-1B + S_Papuan-5B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Jordanian-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Papuan-4A Discordant SGDP 31,565,428 – 31,983,119 417,690.5 0.26588415 18 201.4914 1,786.7
S_Tubalar-1B + B_Dai-4B Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Tubalar-1B + S_Papuan-14A Discordant SGDP 31,075,226 – 31,983,119 907,892.5 0.57824643 44 436.7884 2,014.7
S_Tubalar-1B + B_Papuan-15A Discordant SGDP 31,785,735 – 32,452,204 666,469.5 0.48873303 64 320.9054 3,988.7
S_Tubalar-1B + S_Papuan-9B Discordant SGDP 31,565,428 – 31,795,978 230,549.5 0.00830117 8 111.6638 1,432.9
S_Tubalar-1B + S_Karitiana-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Papuan-2A Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Tubalar-1B + S_Pima-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Chukchi-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + B_Australian-4A Discordant SGDP 31,687,839 – 31,785,796 97,957.0 0.00251094 4 48.0194 1,666.0
S_Tubalar-1B + S_Itelman-1A Discordant SGDP 31,112,961 – 31,868,351 755,390.0 0.28655455 43 363.5872 2,365.3
S_Mansi-2B + S_Papuan-3B Discordant SGDP 31,041,075 – 31,868,351 827,276.0 0.37217585 79 398.0925 3,968.9
S_Tubalar-1B + S_Mala-2A Discordant SGDP 31,565,428 – 31,868,351 302,923.0 0.01367089 11 146.4030 1,502.7
S_Mansi-2B + S_Papuan-10A Discordant SGDP 31,565,428 – 32,048,924 483,495.5 0.34492814 17 233.0778 1,458.7
S_Tubalar-1B + S_Mala-3B Discordant SGDP 31,575,111 – 31,795,978 220,867.0 0.00751377 9 107.0162 1,682.0
S_Mansi-2B + S_Papuan-4A Discordant SGDP 31,139,237 – 32,043,090 903,853.5 0.56728663 54 434.8497 2,483.6
S_Tubalar-1B + S_Brahmin-1A Discordant SGDP 31,040,456 – 31,795,978 755,522.0 0.37147296 65 363.6506 3,574.9
S_Mansi-2B + S_Papuan-12A Discordant SGDP 31,565,428 – 32,048,924 483,495.5 0.34492814 16 233.0778 1,372.9
S_Tubalar-1B + S_Madiga-1B Discordant SGDP 31,575,111 – 31,795,978 220,867.0 0.00751377 11 107.0162 2,055.8
S_Mansi-2B + S_Khonda_Dora-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Madiga-2A Discordant SGDP 31,134,695 – 31,785,796 651,101.0 0.24402329 46 313.5285 2,934.3
S_Mansi-2B + S_Brahui-1B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Pathan-1A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Finnish-1B Discordant SGDP 31,785,735 – 33,231,339 1,445,604.0 0.79522680 195 694.8899 5,612.4
S_Tubalar-1B + S_Pathan-2B Discordant SGDP 31,094,427 – 31,785,796 691,369.5 0.29577089 40 332.8574 2,403.4
S_Mansi-2B + S_French-2A Discordant SGDP 31,106,698 – 31,785,796 679,098.5 0.28979702 46 326.9673 2,813.7
S_Tubalar-1B + S_Burusho-2B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Georgian-1B Discordant SGDP 31,697,077 – 31,785,796 88,719.5 0.00206353 5 43.5854 2,294.3
S_Tubalar-1B + S_Abkhasian-1B Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Mansi-2B + S_Greek-2B Discordant SGDP 31,565,428 – 32,353,201 787,773.0 0.44553478 39 379.1310 2,057.3
S_Tubalar-1B + S_Bulgarian-1B Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Sardinian-2A Discordant SGDP 31,106,698 – 31,785,796 679,098.5 0.28979702 41 326.9673 2,507.9
S_Tubalar-1B + S_English-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Kyrgyz-2A Discordant SGDP 31,601,307 – 31,868,351 267,044.5 0.01132961 6 129.1814 928.9
S_Tubalar-1B + S_Estonian-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Mansi-2B + S_Polish-1A Discordant SGDP 31,601,307 – 31,988,126 386,819.5 0.27456506 18 186.6734 1,928.5
S_Tubalar-1B + S_Estonian-2B Discordant SGDP 31,134,695 – 31,795,978 661,282.5 0.24516534 43 318.4156 2,700.9
S_Mansi-2B + S_Lezgin-1A Discordant SGDP 31,700,429 – 31,785,796 85,367.5 0.00191709 4 41.9764 1,905.8
S_Tubalar-1B + S_Estonian-1B Discordant SGDP 31,785,735 – 31,795,978 10,243.0 0.00114214 2 5.9166 6,760.6
S_Mansi-2B + S_Spanish-2A Discordant SGDP 31,785,735 – 31,785,796 61.5 0.00000010 2 1.0295 38,853.1
S_Tubalar-1B + S_Finnish-2A Discordant SGDP 31,041,075 – 31,795,978 754,902.5 0.36680613 43 363.3532 2,366.8
S_Mansi-2B + B_Sardinian-3A Discordant SGDP 31,687,839 – 31,785,796 97,957.0 0.00251094 4 48.0194 1,666.0
S_Tubalar-1B + S_Saami-1A Discordant SGDP 31,687,839 – 31,785,796 97,957.0 0.00251094 5 48.0194 2,082.5
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

The human.genome.dating database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This website was created, designed, and edited by ORCID iD iconPatrick K. Albers

The contents of human.genome.dating are available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) with attribution (citation) required.

human.genome.dating © 2019 - 2026 Contact Terms & Conditions This website does not use cookies and does not collect any personal information about you.