HumanGenomeDating
Atlas of Variant Age
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Examples: LCT, MCM6, EDAR, ZEB1
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TGP
1000 Genomes Project
Populations: 26
Individuals: 2,535
Ancestry analyses:565,507,800
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SGDP
Simons Genome Diversity Project
Populations: 130
Individuals: 278
Ancestry analyses:6,800,992
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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs985134850
Alleles:
reference
C
ancestral
alternate
T
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 10   position  31,685,228  (GRCh37) Explore rs985134850 on Ensembl!
Allele frequency in   SGDP ⇪
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 98.1%
1.9%
EAS 98.9%
1.1%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Select clock model
  Mutation clock
  Recombination clock
  Joint clock
Age estimation summary Mutation clock
Data source Estimated age of T allele # pairs = concordant + discordant Quality score
    Genomes in SGDP505.9 generations 98  =  1  +  971.000
Pairwise results table Mutation clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Yakut-1A + S_Oroqen-2A Concordant SGDP 31,068,515 – 32,289,319 1,220,804.0 0.76766556 15 586.9859 511.1
S_Oroqen-2A + S_Uygur-1A Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 12 88.9204 2,699.0
S_Oroqen-2A + S_Ulchi-2B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 8 88.9204 1,799.4
S_Oroqen-2A + S_Mixe-2B Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 5 72.5092 1,379.1
S_Oroqen-2A + B_French-3B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Bergamo-2A Discordant SGDP 31,685,184 – 31,744,517 59,333.5 0.00194370 4 29.4801 2,713.7
S_Oroqen-2A + S_Kalash-2A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + S_Papuan-4A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Cambodian-2B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 12 88.9204 2,699.0
S_Yakut-1A + S_Even-1A Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 6 72.5092 1,655.0
S_Yakut-1A + S_Yakut-2B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 10 88.9204 2,249.2
S_Yakut-1A + S_Even-2B Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 6 72.5092 1,655.0
S_Yakut-1A + S_Even-3B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Ulchi-1B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 13 88.9204 2,924.0
S_Yakut-1A + S_Tubalar-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + S_Tu-1B Discordant SGDP 31,134,695 – 31,868,351 733,656.0 0.25053506 73 353.1549 4,134.2
S_Oroqen-2A + B_Australian-3B Discordant SGDP 31,685,184 – 31,752,325 67,141.0 0.00228293 3 33.2277 1,805.7
S_Yakut-1A + S_Han-1A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Irula-1A Discordant SGDP 31,685,184 – 31,752,325 67,141.0 0.00228293 4 33.2277 2,407.6
S_Yakut-1A + S_Tu-2A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Finnish-1A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Uygur-2B Discordant SGDP 31,565,428 – 31,697,077 131,648.5 0.00509559 8 64.1913 2,492.6
S_Oroqen-2A + S_Polish-1B Discordant SGDP 31,565,428 – 31,697,077 131,648.5 0.00509559 5 64.1913 1,557.8
S_Yakut-1A + S_She-2A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Yemenite_Jew-1B Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 6 72.5092 1,655.0
S_Yakut-1A + S_Burmese-1B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 10 88.9204 2,249.2
S_Oroqen-2A + S_Tubalar-2B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Kinh-2B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Naxi-3B Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 5 72.5092 1,379.1
S_Yakut-1A + S_Kinh-1B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + S_Dai-2A Discordant SGDP 31,094,427 – 31,868,351 773,924.5 0.30228266 80 372.4838 4,295.5
S_Yakut-1A + S_Bougainville-2B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + S_Thai-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Papuan-3B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Maori-1B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Papuan-1B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Papuan-7B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Papuan-4A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Kusunda-2A Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 12 137.6738 1,743.3
S_Yakut-1A + S_Papuan-7B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Armenian-1A Discordant SGDP 31,565,428 – 31,697,077 131,648.5 0.00509559 4 64.1913 1,246.3
S_Yakut-1A + S_Papuan-9B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Icelandic-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Papuan-12B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Tuscan-2B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Papuan-2A Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 11 88.9204 2,474.1
S_Oroqen-2A + B_Dai-4B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 10 88.9204 2,249.2
S_Yakut-1A + S_Mansi-2A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Mozabite-1A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Kapu-1B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Pima-2A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Mala-3B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + S_Mongola-2B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Brahmin-1A Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 11 88.9204 2,474.1
S_Oroqen-2A + S_Altaian-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Kusunda-1B Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 14 137.6738 2,033.8
S_Oroqen-2A + S_Even-2A Discordant SGDP 31,068,515 – 32,645,290 1,576,775.5 1.02001158 78 757.8522 2,058.4
S_Yakut-1A + S_Kusunda-2A Discordant SGDP 31,583,614 – 31,868,351 284,737.0 0.01207056 15 137.6738 2,179.1
S_Oroqen-2A + S_Miao-1B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 12 88.9204 2,699.0
S_Yakut-1A + S_Brahui-2A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Yi-2B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 7 88.9204 1,574.4
S_Yakut-1A + S_Makrani-1B Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 6 72.5092 1,655.0
S_Oroqen-2A + S_She-1B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Balochi-1A Discordant SGDP 31,032,459 – 31,868,351 835,892.0 0.39159157 109 402.2282 5,419.8
S_Oroqen-2A + S_Korean-2A Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 12 88.9204 2,699.0
S_Yakut-1A + S_Pathan-2A Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 10 88.9204 2,249.2
S_Oroqen-2A + S_Thai-2A Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 6 72.5092 1,655.0
S_Yakut-1A + S_Burusho-1B Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 9 88.9204 2,024.3
S_Oroqen-2A + S_Dusun-1B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Kalash-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + S_Papuan-5B Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 3 72.5092 827.5
S_Yakut-1A + S_Sindhi-2A Discordant SGDP 31,565,428 – 31,697,077 131,648.5 0.00509559 5 64.1913 1,557.8
S_Oroqen-2A + S_Papuan-14A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Punjabi-4B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Chukchi-1B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Abkhasian-1B Discordant SGDP 31,685,184 – 31,841,841 156,657.5 0.00728276 9 76.1956 2,362.3
S_Oroqen-2A + S_Madiga-1B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Bulgarian-1A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Pathan-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Czech-2A Discordant SGDP 31,685,184 – 31,744,517 59,333.5 0.00194370 5 29.4801 3,392.1
S_Oroqen-2A + S_Albanian-1B Discordant SGDP 31,685,184 – 31,792,748 107,564.0 0.00336064 5 52.6307 1,900.0
S_Yakut-1A + S_Estonian-2B Discordant SGDP 31,685,184 – 31,792,748 107,564.0 0.00336064 7 52.6307 2,660.0
S_Oroqen-2A + S_English-2B Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Finnish-2B Discordant SGDP 31,685,184 – 31,744,517 59,333.5 0.00194370 5 29.4801 3,392.1
S_Oroqen-2A + S_Finnish-1B Discordant SGDP 31,685,184 – 31,841,841 156,657.5 0.00728276 7 76.1956 1,837.4
S_Yakut-1A + S_Saami-1A Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 5 72.5092 1,379.1
S_Oroqen-2A + S_Druze-1B Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_French-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + S_Sardinian-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Yakut-1A + S_Iranian-1A Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 6 72.5092 1,655.0
S_Oroqen-2A + S_Jordanian-2A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Yakut-1A + S_Palestinian-3A Discordant SGDP 31,685,184 – 31,685,235 51.0 0.00000692 2 1.0245 39,044.2
S_Oroqen-2A + S_Yemenite_Jew-1B Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 5 72.5092 1,379.1
S_Yakut-1A + S_Sardinian-1A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + B_French-3A Discordant SGDP 31,548,099 – 31,697,077 148,977.5 0.01123964 6 72.5092 1,655.0
S_Yakut-1A + S_Orcadian-2A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
S_Oroqen-2A + B_Papuan-15A Discordant SGDP 31,685,184 – 31,868,351 183,167.5 0.00946144 12 88.9204 2,699.0
S_Yakut-1A + S_Yemenite_Jew-2A Discordant SGDP 31,685,184 – 31,697,077 11,893.0 0.00088614 2 6.7086 5,962.5
View as figure
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.
 

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