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Genealogical Estimation of Variant Age (GEVA)

Inference of the ancestral origin of a genetic variant at a single locus

rs985134850
Alleles:
reference
C
ancestral
alternate
T
derived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
Allele frequency in   SGDP
Sample 99.6%
0.4%
AFR 100.0%
0.0%
AMR 100.0%
0.0%
CAS 98.1%
1.9%
EAS 98.9%
1.1%
OCN 100.0%
0.0%
SAS 100.0%
0.0%
WEA 100.0%
0.0%
reference ← allele frequency → alternate
Age estimation summary Recombination clock
Data source Estimated age of T allele # pairs = concordant + discordant Quality score
 Genomes in SGDP103.2 generations 98  =  1  +  970.990
Pairwise results table Recombination clock
Haplotype pair Pair type Data source Breakpoint positions Physical length (bp) Genetic Length (cM) α β Mean TMRCA (generations)
S_Yakut-1A + S_Oroqen-2A Concordant SGDP 31,068,51532,289,319 1,220,804.0 0.76766556 3 615.1324 97.5
S_Oroqen-2A + S_Uygur-1A Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Oroqen-2A + S_Ulchi-2B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Oroqen-2A + S_Mixe-2B Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Oroqen-2A + B_French-3B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Bergamo-2A Discordant SGDP 31,685,18431,744,517 59,333.5 0.00194370 3 2.5550 23,483.7
S_Oroqen-2A + S_Kalash-2A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + S_Papuan-4A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Cambodian-2B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Even-1A Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Yakut-2B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Even-2B Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Even-3B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Ulchi-1B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Tubalar-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + S_Tu-1B Discordant SGDP 31,134,69531,868,351 733,656.0 0.25053506 3 201.4281 297.9
S_Oroqen-2A + B_Australian-3B Discordant SGDP 31,685,18431,752,325 67,141.0 0.00228293 3 2.8263 21,228.8
S_Yakut-1A + S_Han-1A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Irula-1A Discordant SGDP 31,685,18431,752,325 67,141.0 0.00228293 3 2.8263 21,228.8
S_Yakut-1A + S_Tu-2A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Finnish-1A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Uygur-2B Discordant SGDP 31,565,42831,697,077 131,648.5 0.00509559 3 5.0765 11,819.2
S_Oroqen-2A + S_Polish-1B Discordant SGDP 31,565,42831,697,077 131,648.5 0.00509559 3 5.0765 11,819.2
S_Yakut-1A + S_She-2A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Yemenite_Jew-1B Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Burmese-1B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Oroqen-2A + S_Tubalar-2B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Kinh-2B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Naxi-3B Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Kinh-1B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + S_Dai-2A Discordant SGDP 31,094,42731,868,351 773,924.5 0.30228266 3 242.8261 247.1
S_Yakut-1A + S_Bougainville-2B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + S_Thai-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Papuan-3B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Maori-1B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Papuan-1B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Papuan-7B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Papuan-4A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Kusunda-2A Discordant SGDP 31,583,61431,868,351 284,737.0 0.01207056 3 10.6565 5,630.4
S_Yakut-1A + S_Papuan-7B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Armenian-1A Discordant SGDP 31,565,42831,697,077 131,648.5 0.00509559 3 5.0765 11,819.2
S_Yakut-1A + S_Papuan-9B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Icelandic-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Papuan-12B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Tuscan-2B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Papuan-2A Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Oroqen-2A + B_Dai-4B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Mansi-2A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Mozabite-1A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Kapu-1B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Pima-2A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Mala-3B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + S_Mongola-2B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Brahmin-1A Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Oroqen-2A + S_Altaian-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Kusunda-1B Discordant SGDP 31,583,61431,868,351 284,737.0 0.01207056 3 10.6565 5,630.4
S_Oroqen-2A + S_Even-2A Discordant SGDP 31,068,51532,645,290 1,576,775.5 1.02001158 3 817.0093 73.4
S_Yakut-1A + S_Kusunda-2A Discordant SGDP 31,583,61431,868,351 284,737.0 0.01207056 3 10.6565 5,630.4
S_Oroqen-2A + S_Miao-1B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Brahui-2A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Yi-2B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Makrani-1B Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Oroqen-2A + S_She-1B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Balochi-1A Discordant SGDP 31,032,45931,868,351 835,892.0 0.39159157 3 314.2733 190.9
S_Oroqen-2A + S_Korean-2A Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Pathan-2A Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Oroqen-2A + S_Thai-2A Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Burusho-1B Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Oroqen-2A + S_Dusun-1B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Kalash-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + S_Papuan-5B Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Sindhi-2A Discordant SGDP 31,565,42831,697,077 131,648.5 0.00509559 3 5.0765 11,819.2
S_Oroqen-2A + S_Papuan-14A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Punjabi-4B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Chukchi-1B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Abkhasian-1B Discordant SGDP 31,685,18431,841,841 156,657.5 0.00728276 3 6.8262 8,789.7
S_Oroqen-2A + S_Madiga-1B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Bulgarian-1A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Pathan-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Czech-2A Discordant SGDP 31,685,18431,744,517 59,333.5 0.00194370 3 2.5550 23,483.7
S_Oroqen-2A + S_Albanian-1B Discordant SGDP 31,685,18431,792,748 107,564.0 0.00336064 3 3.6885 16,266.7
S_Yakut-1A + S_Estonian-2B Discordant SGDP 31,685,18431,792,748 107,564.0 0.00336064 3 3.6885 16,266.7
S_Oroqen-2A + S_English-2B Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Finnish-2B Discordant SGDP 31,685,18431,744,517 59,333.5 0.00194370 3 2.5550 23,483.7
S_Oroqen-2A + S_Finnish-1B Discordant SGDP 31,685,18431,841,841 156,657.5 0.00728276 3 6.8262 8,789.7
S_Yakut-1A + S_Saami-1A Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Oroqen-2A + S_Druze-1B Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_French-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + S_Sardinian-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Yakut-1A + S_Iranian-1A Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Oroqen-2A + S_Jordanian-2A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Yakut-1A + S_Palestinian-3A Discordant SGDP 31,685,18431,685,235 51.0 0.00000692 3 1.0055 59,669.9
S_Oroqen-2A + S_Yemenite_Jew-1B Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Sardinian-1A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + B_French-3A Discordant SGDP 31,548,09931,697,077 148,977.5 0.01123964 3 9.9917 6,005.0
S_Yakut-1A + S_Orcadian-2A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
S_Oroqen-2A + B_Papuan-15A Discordant SGDP 31,685,18431,868,351 183,167.5 0.00946144 3 8.5692 7,001.9
S_Yakut-1A + S_Yemenite_Jew-2A Discordant SGDP 31,685,18431,697,077 11,893.0 0.00088614 3 1.7089 35,110.1
Data shown in this table can be downloaded from this page.
α Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
β Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default).
Mean TMRCA Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default.