Genealogical Estimation of Variant Age (GEVA)
Inference of the ancestral origin of a genetic variant at a single locus
rs200026406
Alleles:
reference
Aancestral
alternate
Gderived
Age estimated for the alternate allele, assuming that it was derived from the reference allele as the ancestral state.
How was the ancestral/derived state determined?Chromosome 
Explore
2
position 136,586,512 (GRCh37)
Explore rs200026406 on Ensembl!
Allele frequency in SGDP ⇪
| Sample | 99.6% |
0.4% |
|
AFR |
97.7% |
2.3% |
|
AMR |
100.0% |
0.0% |
|
CAS |
100.0% |
0.0% |
|
EAS |
100.0% |
0.0% |
|
OCN |
100.0% |
0.0% |
|
SAS |
100.0% |
0.0% |
|
WEA |
100.0% |
0.0% |
|
| reference | ← allele frequency → | alternate |
Select clock model
Age estimation summary
| Data source | Estimated age of G allele |
# pairs = concordant + discordant | Quality score |
|---|---|---|---|
| Genomes in SGDP | 2,864.6 generations | 98 = 1 + 97 | 1.000 |
Pairwise results table
| Haplotype pair | Pair type | Data source | Breakpoint positions | Physical length (bp) | Genetic Length (cM) | α | β | Mean TMRCA (generations) |
|---|---|---|---|---|---|---|---|---|
| S_Ju_hoan_North-1B + S_Khomani_San-1B | Concordant | SGDP | 135,436,058 – 136,772,749 |
1,336,691.0 |
0.36529398 |
96 | 934.8469 | 2,053.8 |
| S_Ju_hoan_North-1B + S_Saharawi-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Turkish-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Orcadian-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + B_Mixe-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Lezgin-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Druze-1B | Discordant | SGDP | 136,585,930 – 136,586,524 |
594.0 |
0.00023322 |
4 | 1.4717 | 54,358.9 |
| S_Khomani_San-1B + S_Brahui-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Cambodian-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Aleut-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Tlingit-1B | Discordant | SGDP | 136,585,616 – 136,586,524 |
908.5 |
0.00039023 |
4 | 1.7483 | 45,759.6 |
| S_Ju_hoan_North-1B + S_Tubalar-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Mongola-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Mongola-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Mixtec-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Pima-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Hezhen-1A | Discordant | SGDP | 136,585,930 – 136,586,524 |
594.0 |
0.00023322 |
4 | 1.4717 | 54,358.9 |
| S_Ju_hoan_North-1B + S_Naxi-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_English-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Miao-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Norwegian-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Dai-3B | Discordant | SGDP | 136,585,616 – 136,586,524 |
908.5 |
0.00039023 |
4 | 1.7483 | 45,759.6 |
| S_Khomani_San-1B + S_Spanish-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Miao-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Norwegian-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Uygur-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_North_Ossetian-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Xibo-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + B_Crete-2B | Discordant | SGDP | 136,585,616 – 136,586,524 |
908.5 |
0.00039023 |
4 | 1.7483 | 45,759.6 |
| S_Ju_hoan_North-1B + S_Yi-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Piapoco-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Dai-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Mixe-3A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Xibo-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Balochi-1B | Discordant | SGDP | 136,585,930 – 136,586,524 |
594.0 |
0.00023322 |
4 | 1.4717 | 54,358.9 |
| S_Ju_hoan_North-1B + S_Kinh-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Hazara-1A | Discordant | SGDP | 136,585,930 – 136,586,524 |
594.0 |
0.00023322 |
4 | 1.4717 | 54,358.9 |
| S_Ju_hoan_North-1B + S_Dusun-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Georgian-2B | Discordant | SGDP | 136,585,930 – 136,586,524 |
594.0 |
0.00023322 |
4 | 1.4717 | 54,358.9 |
| S_Ju_hoan_North-1B + S_Chukchi-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Bergamo-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Mozabite-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Polish-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Mansi-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Adygei-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Brahmin-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Yemenite_Jew-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Burusho-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Mozabite-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Sindhi-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Orcadian-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Punjabi-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Lezgin-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Punjabi-3B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Spanish-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Bulgarian-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Yemenite_Jew-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Atayal-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + B_Sardinian-3B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Czech-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Karitiana-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_English-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Piapoco-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_English-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Pima-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_English-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Mixtec-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Estonian-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Maori-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Estonian-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Brahui-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Finnish-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Makrani-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Finnish-3B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Punjabi-4A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_BantuKenya-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Finnish-3A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Saami-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Greek-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Saami-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Bergamo-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_French-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Jordanian-3B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_French-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Orcadian-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Basque-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Lezgin-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Basque-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Adygei-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Icelandic-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Spanish-1A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Iranian-1B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Tajik-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Samaritan-1B | Discordant | SGDP | 136,585,616 – 136,586,524 |
908.5 |
0.00039023 |
4 | 1.7483 | 45,759.6 |
| S_Khomani_San-1B + B_French-3A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Ju_hoan_North-1B + S_Tuscan-2B | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
| S_Khomani_San-1B + S_Karitiana-1B | Discordant | SGDP | 136,585,930 – 136,586,524 |
594.0 |
0.00023322 |
4 | 1.4717 | 54,358.9 |
| S_Ju_hoan_North-1B + S_Kyrgyz-2A | Discordant | SGDP | 136,586,461 – 136,586,524 |
63.0 |
0.00001975 |
4 | 1.0460 | 76,478.9 |
Data shown in this table can be downloaded from this page.
| α | Shape parameter of the Gamma distribution, calculated from the number of pairwise differences along the sequence of the inferred shared haplotype segment (mutation clock), or the breakpoints detected (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| β | Rate parameter of the Gamma distribution, calculated from the physical length of the inferred shared haplotype segment and the mutation rate (mutation clock), or the genetic length given the variable recombination rate (recombination clock), or both (joint clock); plus the parameter of the coalescent prior distribution (equal to 1 by default). |
| Mean TMRCA | Calculated as the mean of the Gamma distribution with parameters α and β, multiplied by 2 x Ne, where Ne = 10,000 by default. |
|---|
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This website was created, designed, and edited by
Patrick K. Albers
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